Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1804 ATGCGAAAATCGGCAGTTGCAATTGCAGCCGTCGCCGGTGGGAGAGAGGTCGCGATTCTGCGTTCTCTGCTGATTTTGAACAATTGTGAGATGCCGGGAATTGTCATGGATGAAATCAATGAAGAAAGGGCTGTGAATAAACACAACGGTTCTTCGATTCATATGGAAGAGTCGTATGGAAACAAGTCGCCGAGGAGCGGGTTGAGTGTTCAGAGCCATGGAAGTGTTCATGTTGATTTCCCTGTTGATGGCTTGGTCGATACCTCTATTGAGAAGCTTTATGAGAATGTTTGTGATATGCAAAGTTCGGATCAGTCACCTTCAAGGCGTAGCTTTGGCTCTGATGGTGAGGAATCCAGGATTGATTCTGAACTGAATCATCTTGTTGGAGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAAGATATTGTTGAGAAGCCTGAACATGATTTTCCTAGTGATTCTATGAATCAATCACCATCTGAAGATAAGAAGGAGAAGGCTGAAAATACCCAACCTGGAAGCTCAAAACGTCTTTCTTCTGGAAAAAAAGCTCCTCACCTGCAATTGGACCACGAGACATCTCCAAAATCAAGTCCCAGGGGCAAGGGTTTGTTGGATAAACCCCCTATTAGCAGAAAGAATGAAAAGAATTTGAAAAAAAATAGTCCAGTTGCTGCTCAATTAAAGAAGCAGAAAGATTCACCTTTGAGGGGCTCAAAAATGCAGAATGGAATTGAGGATTTTGATGAATCAATGATGGATAATCCTGATCTAGGACCCTATCTACTTAAGCAAGCAAGGAATTTAGTTTCCTCAGGGGAGAATCTGCAGAAAGCTCTTTTAATAGCACTTCGTGCTGCAAAATCTTTTGAACTATCTGCAAATGGGAAACCCAACTTAGAACTTGTTATGTGTTTGCATGTCACAGCAGCAATATACTGCAGCTTAGGCCAGTACAGTGAGGCAATACCTCTATTGGAGCATTCCATCGAGATTCCTGCCATCAAGGAAGGGCATGAGCATGCACTGGCCAAATTTGCAGGGCACATGCAATTGGGTGATACCTATGCAATGCTGGGCCAGCTGGAAAATTCTCTAGTCTGTTATACAACTGGGTTAGAGGTGCAGAAACAAGTCCTAGGAGAAGCAGACCCCAGAGTTGGTGAGACCTATAGGTATTTAGCTGAAGCTCATGTTCAAGCTTTGCGATTTGATGAGGCTGAGAAATTTTGTCAAATGGCACTCGATATTCACAAAAAGAATGTTGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGGAGGCTTATGGGCCTCATATGTGAAACAAAAGGAGATCATGAAGCTGCGCTCGAGCATCTAGTTTTAGCCAGCATGGCCATGGTGGCAAATGGCCAAGAGACTGATGTGGCTGCAGTTGATTGCAGCATTGGAGATTCATACTTATCCTTGTCCCGCTACGACGAGGCTGTTTTTGCTTATCAGAAAGCCCTCACTGTTTTCAAAACCACTAAGGGAGAAAACCATCCAGCAGTTGGTTCAGTATATGTTCGTCTTGCTGATTTATACAACAAGACTGGAAAAATGAGGGAGTCAGTATCGTACTGTGAAAATGCCCTTCGAATTTATGAAAAGCCTGTCCCAGGGATTCCTCCAGAGGAGATTGCTAGTGGTCTTACTGATATTGCAGCTATTTATGAATCAATGAATGATGTTGAGCAAGCAGTCAAATTATTACACAGGGCATTGAAGATATATAATGATGCCCCGGGACAGCAAAACACCATTGCTGGAATAGAAGCCCAGATGGGTGTCTTGTATTATATGTTGGGGAACTATTCTGAATCTTACGACTCCTTCAACAATGCGATTCCAAAGCTTCGCAACAGTGGAGAGAAAAAATCTGCTTTCTTTGGTATAGCCCTTAATCAAATGGGTCTCGTGTGTGTTCAGAAATACGCTATAAATGAAGCTGTGGAGTTATTTGAAGAAGCCAAGAGCATATTAGAGCAAGAATATGGACCTTATCATCCTGATACTCTCGGGGTATACAGCAACCTTGCTGGAACATACGATGCAATTGGCAGGTTAGATGATGCAATTGAAATTTTGGAGTATGTTGTTGGCATGCGGGAGGAAAAACTTGGGACAGCCAATCCCGATGTCGATGATGAGAAGAGGAGGTTGTCTGAGTTGTTGAAAGAAGCAGGTAGAGTTCGGAGCCGAAAGGCGAGATCACTCGAGACTCTTCTCGATGCCAATGCTCATCCTGTAAACAGTAAAGTTTTGAATGAAAACTACAAGGATGAGATAGGTTTCTTCCACTCACCATTCTTCCGATCGCCGACTGCAAGTACAAGATATCGTGTATTTGTATCTGCAACTATGGTTGAAAAACCTTCTAGTTCGTCATCTACTCTTGTTGATCAGCCAGTTGTTCCAGGAGACGTGGTTCTCGACCTCTCGAACATGGCCAACGAGACAATCAAGCTTGGAGGCGGTCTTCGACAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAACTGAGGTTCTCTAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTTCTTGGAATCGTGCTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCATTGGCCGTTCTTCCTGTTCTTGCATTTGAAGGAGGAACTAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTGAACCCTGGTATGAATCCTGAGTTGGCATGTACAGATGCGAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCCGCATGTCCAGTTCTTGAATCTCTTGGAAAGAAGCTTTCATTCGAGATAGCAGTTGGTTTAAATGGCCGAGTTTGGGTCAATTCCGATTCTCCGTCCACAACCATTGTTGTTTCAAATGCAATATTGAACTCCGAGACTCTGTCTGGGGTTCAACAGAGAATCATGGTGGACAAACTCCTTAACAATTTAAAGCTGTCAAAAGGGGCTCCCATGGCGGCAACCCAATCTGCTCCTCCTTCTTCGAATGACGATAACTCCCAGAATTCAGCTCCAGCTCCAGCTCCTGCACGAGCTACGATCGAGGATCATGGAGATGCGAAGGCGGAGGTTGAGAAGCAAACCTCTCCACCATCGGTGTTTGTGAACTCTGAACCAATGAGAGAGGATCAAGTGCAAAATGCTGTGAAATTTCTTCAACACCCTAGAGTAAGAGGCTCTCCTGTTGTCTATAGACGATCGTTTTTAGAAAGAAAGGGTCTTACAAAGGAAGAGATTGATGAAGCATTCAGGCGTGTGCCCGACCCGCCTTCTAATGCTCAGACTGCTACTGTGAGTCAAGATGGACAGGTGAACACAGTTCAACCACAACCCTTGACACAATCTCTTCAACCAGTTGCTGCTGCCACTCCTCTTGCTGGTGGTGAATCTCGTGTGGGTACTGTTGCACGGTCTAGATTCCATTGGTCACATGCCATTCTCGCAATAGGTGTACTGGCCGTTTCAGGTGCTGGAACAGTTGTAGTATTCAAGAATTCTATTATTCCTAGGTTAAAATCTTGGGTGCGTAAAGTTGTATTAGAAGATGATGACGTTGAGAAGAAAATAAATTTAAAACCAAGTGCAGCAGAGGAAGCAGCTGCTGCTGCCAAAGCAGCAGCAGCAGCAGCATCTGATGTGGCAAAGGCGAGCCAAGAGATGCTGTTTTCTAAAAATGAAGAGAAAAAGAAGTTTGAGGACTGTGTCGACTTGTTGAATGCTCAGCTTGGGCAGATGAAGTTGATGCTGAAGGCCATTCAGAATTTGGAAGCAACCACGTATGGAAGAACTACTACCGTTGATCAAGAAGATTATCGAATTACTCCCATGAGTTCAAAGCAGCCATATTCCAATGGCAAGTTGGACCCTAGCTTCCAGTCAG 4057 44.37 MRKSAVAIAAVAGGREVAILRSLLILNNCEMPGIVMDEINEERAVNKHNGSSIHMEESYGNKSPRSGLSVQSHGSVHVDFPVDGLVDTSIEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEEDIVEKPEHDFPSDSMNQSPSEDKKEKAENTQPGSSKRLSSGKKAPHLQLDHETSPKSSPRGKGLLDKPPISRKNEKNLKKNSPVAAQLKKQKDSPLRGSKMQNGIEDFDESMMDNPDLGPYLLKQARNLVSSGENLQKALLIALRAAKSFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAIPLLEHSIEIPAIKEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGEADPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVYVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAAIYESMNDVEQAVKLLHRALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYDSFNNAIPKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDANAHPVNSKVLNENYKDEIGFFHSPFFRSPTASTRYRVFVSATMVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAVLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPACPVLESLGKKLSFEIAVGLNGRVWVNSDSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSKGAPMAATQSAPPSSNDDNSQNSAPAPAPARATIEDHGDAKAEVEKQTSPPSVFVNSEPMREDQVQNAVKFLQHPRVRGSPVVYRRSFLERKGLTKEEIDEAFRRVPDPPSNAQTATVSQDGQVNTVQPQPLTQSLQPVAAATPLAGGESRVGTVARSRFHWSHAILAIGVLAVSGAGTVVVFKNSIIPRLKSWVRKVVLEDDDVEKKINLKPSAAEEAAAAAKAAAAAASDVAKASQEMLFSKNEEKKKFEDCVDLLNAQLGQMKLMLKAIQNLEATTYGRTTTVDQEDYRITPMSSKQPYSNGKLDPSFQS 1352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28527479 28539983 + ClG42_06g0180400.10 Clacu06g1804 252452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1804 1352 Gene3D Tetratricopeptide repeat domain 459 640 IPR011990 GO:0005515(InterPro)
Clacu06g1804 1352 Gene3D Tetratricopeptide repeat domain 301 458 IPR011990 GO:0005515(InterPro)
Clacu06g1804 1352 Pfam KH domain 956 1004 IPR004088 GO:0003723(InterPro)
Clacu06g1804 1352 SMART tpr_5 349 382 IPR019734 GO:0005515(InterPro)
Clacu06g1804 1352 SMART tpr_5 473 506 IPR019734 GO:0005515(InterPro)
Clacu06g1804 1352 SMART tpr_5 515 548 IPR019734 GO:0005515(InterPro)
Clacu06g1804 1352 SMART tpr_5 641 674 IPR019734 GO:0005515(InterPro)
Clacu06g1804 1352 SMART tpr_5 558 591 IPR019734 GO:0005515(InterPro)
Clacu06g1804 1352 SMART tpr_5 599 632 IPR019734 GO:0005515(InterPro)
Clacu06g1804 1352 SMART tpr_5 391 424 IPR019734 GO:0005515(InterPro)
Clacu06g1804 1352 SMART tpr_5 306 339 IPR019734 GO:0005515(InterPro)
Clacu06g1804 1352 SMART tpr_5 683 716 IPR019734 GO:0005515(InterPro)
Clacu06g1804 1352 Pfam Peroxisomal membrane protein PEX14-like, central 1197 1315 IPR054154 -
Clacu06g1804 1352 CDD KH-I_Rrp40 955 1033 IPR049469 -
Clacu06g1804 1352 MobiDBLite consensus disorder prediction 1046 1066 - -
Clacu06g1804 1352 MobiDBLite consensus disorder prediction 1043 1098 - -
Clacu06g1804 1352 CDD S1_Rrp40 868 953 IPR037319 GO:0003723(InterPro)
Clacu06g1804 1352 Gene3D - 1092 1158 IPR036388 -
Clacu06g1804 1352 MobiDBLite consensus disorder prediction 186 200 - -
Clacu06g1804 1352 FunFam Peroxisomal membrane protein PEX14 1092 1154 - -
Clacu06g1804 1352 SUPERFAMILY Nucleic acid-binding proteins 867 959 IPR012340 -
Clacu06g1804 1352 SUPERFAMILY TPR-like 259 717 IPR011990 GO:0005515(InterPro)
Clacu06g1804 1352 MobiDBLite consensus disorder prediction 111 154 - -
Clacu06g1804 1352 Gene3D K Homology domain, type 1 952 1035 IPR036612 GO:0003723(InterPro)
Clacu06g1804 1352 FunFam Exosome complex exonuclease RRP40 805 870 - -
Clacu06g1804 1352 MobiDBLite consensus disorder prediction 1331 1352 - -
Clacu06g1804 1352 Pfam Exosome complex component RRP40, S1 domain 869 951 - -
Clacu06g1804 1352 Pfam Tetratricopeptide repeat 406 456 - -
Clacu06g1804 1352 Pfam Tetratricopeptide repeat 471 547 - -
Clacu06g1804 1352 Pfam Tetratricopeptide repeat 643 709 - -
Clacu06g1804 1352 MobiDBLite consensus disorder prediction 98 245 - -
Clacu06g1804 1352 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 31 759 - -
Clacu06g1804 1352 Coils Coil 724 744 - -
Clacu06g1804 1352 MobiDBLite consensus disorder prediction 53 72 - -
Clacu06g1804 1352 Gene3D Tetratricopeptide repeat domain 653 757 IPR011990 GO:0005515(InterPro)
Clacu06g1804 1352 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 955 1037 IPR036612 GO:0003723(InterPro)
Clacu06g1804 1352 SUPERFAMILY Ribosomal L27 protein-like 806 867 - -
Clacu06g1804 1352 Gene3D - 804 870 - -
Clacu06g1804 1352 ProSiteProfiles TPR repeat profile. 473 506 IPR019734 GO:0005515(InterPro)
Clacu06g1804 1352 FunFam exosome complex component RRP40 952 1035 - -
Clacu06g1804 1352 FunFam Exosome complex component RRP40 871 951 - -
Clacu06g1804 1352 ProSiteProfiles TPR repeat profile. 558 591 IPR019734 GO:0005515(InterPro)
Clacu06g1804 1352 Gene3D - 875 951 IPR012340 -
Clacu06g1804 1352 Pfam Pex14 N-terminal domain 1100 1144 IPR006785 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1804 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1804 Clacu-Chr6:28527479 Clacu07g1138 Clacu-Chr7:26003658 7.40E-196 dispersed
Clacu06g1804 Clacu-Chr6:28527479 Clacu01g1361 Clacu-Chr1:24907993 6.40E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48