Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1805 ATGATCTGCAAGAGAAGAATTTGGGGTCCATACACAAAAAGTCGTAAAGCAGTGCACACTCGTCTTGTTTCTGAAGTTCTAGAGCACCAGCACCACGATATGATCTTCCTTCCATTTCCTCTTCAACTTTCAGTTTTAATGGCGTTGAATGTTCTTGCACCGCCTGAAATCAAGGCACTTTCCTTCTTGGAATCCTCCAGGTCCAGACACCTCACCAAGCTTCAAGGTGCATCATCCATTAGGGAGTGCAGAACCATAGTTCATAAAAGAATTTACTGTTCTTCACAGCCTCCTCCTCCAGCTTGGCCTGGACGAGCGATCGCAGAGCCGGGATATAAGAAATGGGAAGGCCAGAAGCCTATCTCCATTGTAGGATCCACTGGCTCCATTGGAACTCAGACATTGGATATTGTGGCAGAGAATCCTGAGAAATTTAGAGTTGTGGCACTTGCAGCTGGATCTAATGTAACTCTCCTTGCGGATCAGGTGAAAACATTTAAACCTCAATTAGTTGCTGTAAGAAATGAGTCCTTAGTTGATGAGCTCAAAGAGGCTTTGGCTGATCTTGATGAGAAGCCCGAGATTATCCCTGGTGAGCAGGGAGTAATTGAGGTTGCAAGACACCCAGATGCAGTCACTGTTGTTACAGGAATAGTTGGTTGTGCTGGACTAAAGCCTACTGTTGCTGCAATTGAAGCTGGGAAAGACATAGCCTTGGCCAATAAAGAGACTCTAATTGCTGGTGGTCCCTTTGTACTTCCCCTTGCCCACAAGCACAATGTAAAGATCCTTCCCGCTGATTCAGAACATTCAGCAATATTCCAGTGTATTCAGGGATTGCCCGAGGGTGCACTTCGCCGCATTATTTTGACTGCATCTGGTGGGGCTTTCAGGGACTTGCCAGTTGAAAAGTTGAAGGACGTTAAAGTTGCAGATGCTTTAAAGCATCCTAACTGGAGCATGGGAAAGAAGATCACAGTTGACTCTGCCACTCTTTTCAACAAGGGTCTAGAAGTCATTGAAGCACACTATTTGTTTGGAGCTGACTACGATAACATTGACATTGTAATCCACCCGCAATCTATCATACATTCAATGATAGAAACACAGGATTCGTCTGTTTTAGCACAATTGGGTTGGCCTGATATGCGCTTGCCCATCCTATACACCATAACATGGCCTGACAGATTATACTGCTCAGAAGTAACTTGGCCTCGCCTTGATCTTTGCAAGCTAGGTTCACTCACATTCAAAACTCCAGACAACGTAAAATACCCATCCATGGATCTGGCCTATGCTGCTGGACGGGCGGGAGGAACCATGACTGGAGTCTTGAGTGCAGCTAATGAGAAGGCAGTGGAAATGTTTATTGATGAAAAGATCAGCTACTTGGATATTTTCAAGGTTGTGGAGCTAACATGTGACAAACATCGAAACGAATTGATCACCGCGCCTTCCCTTGAGGAGATCGTACATTACGACTTATGGGCGAGGGATTACGCTGCAAGTTTGCAGTCATCCTCTACTTTTAGTCCCGTAGCTGCATAA 1548 45.35 MICKRRIWGPYTKSRKAVHTRLVSEVLEHQHHDMIFLPFPLQLSVLMALNVLAPPEIKALSFLESSRSRHLTKLQGASSIRECRTIVHKRIYCSSQPPPPAWPGRAIAEPGYKKWEGQKPISIVGSTGSIGTQTLDIVAENPEKFRVVALAAGSNVTLLADQVKTFKPQLVAVRNESLVDELKEALADLDEKPEIIPGEQGVIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDLPVEKLKDVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGADYDNIDIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTITWPDRLYCSEVTWPRLDLCKLGSLTFKTPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCDKHRNELITAPSLEEIVHYDLWARDYAASLQSSSTFSPVAA 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28542651 28553884 + ClG42_06g0180500.10 Clacu06g1805 252453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1805 515 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 423 507 - -
Clacu06g1805 515 Pfam DXP reductoisomerase C-terminal domain 378 499 IPR026877 -
Clacu06g1805 515 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 113 267 - -
Clacu06g1805 515 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 105 507 IPR003821 GO:0008299(InterPro)|GO:0030145(PANTHER)|GO:0030604(PANTHER)|GO:0030604(InterPro)|GO:0046872(InterPro)|GO:0051484(PANTHER)|GO:0070402(PANTHER)
Clacu06g1805 515 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 119 267 IPR036291 -
Clacu06g1805 515 Gene3D - 112 267 - -
Clacu06g1805 515 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 121 249 IPR013512 GO:0070402(InterPro)
Clacu06g1805 515 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 244 381 - -
Clacu06g1805 515 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 121 504 IPR003821 GO:0008299(InterPro)|GO:0030604(InterPro)|GO:0046872(InterPro)
Clacu06g1805 515 NCBIfam 1-deoxy-D-xylulose-5-phosphate reductoisomerase 119 501 IPR003821 GO:0008299(InterPro)|GO:0030604(InterPro)|GO:0046872(InterPro)
Clacu06g1805 515 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 411 505 IPR036169 -
Clacu06g1805 515 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 263 346 IPR013644 GO:0005515(InterPro)
Clacu06g1805 515 Coils Coil 172 192 - -
Clacu06g1805 515 Gene3D - 423 508 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1805 K00099 - - csv:101207716 901.738
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g745 . . Bda06g00595 . . . . . . . Cma10g00125 . . . . . . . . . . . . . Cla06g01661 Cam06g1846 Cec06g1897 Cco06g1902 Clacu06g1805 Cmu06g1746 Cre06g2565 Cone2ag0907 Cone16ag0103 . . . . . . . . . . Bpe07g00836 . . . . Cmo10g00130 . . . . . . Cpe18g00844 . . . . . . . . . . . . . . . Csa01g00150 Chy02g02578 Cme02g01980
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009834 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32