Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1813 ATGGCGGATCTTTACGGACTCCATCCCCTCGCTGATAACTCTTACCAGTCATCTTCAGCGACGACGTTGGGTAGCTTTCCTCTTCTTGCTAATTCTCCAATGGCTTCTGCAGATTATTCTCATCTACTTCCTGCTTTTGAATCGGAATATTTGCGGACGGTTTCGTCGGCCGCCTGCGACACCGTTGCGGCGGCGGCTGAGATTGAAACAGCGCGAGCTAATTCCGAGTACTCCGCCGGTGTAATTCGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAACTCGTCGATGCGTTCGTGAACTGCCAAAAGGTCGGTGTACCGCCGGAGTTCGCTGATATTCCAGACCAAAACAACCGTGGAAGTGATATCGGCGAAGAAATTTCCGGCGTTTCAAATTGCTTGGGTGTCGATCCCGAACTCGATGAGTTCATGGAAACATACTACAGGATACTAGCCAAATACGAGTTAGATCTCTCCCAGTCCTTCATGGAAGCATCTTCCTTTCTCAACAACATGGGAATGCAGTTAAACGTGCTTTGCAATAACGATGAAACTGCTCCGAAAGAGAATATAAGCGCCGGAGAAGTAGAATTACAAGACTCTCTTGTGGTTCCGGGAAATGAAGATCGCGAGCTGAAGGATCGACTTTTGCGGGAGTACGGTGGTCATATTAGTAGCTTAAAGCAGGAATTCTCAAAAACTAAAAAGAAGGCAAATCTGCCGAGAGAAGCCAAACAGATCCTGCTTCACTGGTGGAACAGCCATTCCCAGTGGCCATATCCCACTGACACAGAAAAAGTTGAGTTGGCCGAGTCGACAGGCCTAACCCGAAAACAAATAAACAACTGGTCAGGCATCGACGTTGATATGACTGTAGGAAACGATTCATTATGCGCTCCTCTTGAATGGAAGTTCTCTCAGGTCTTCGGTGAACGAGTTGCCGGAGAGGATATTCAGGATGTTGATATCATATCAGCGATTGGATTCGATAAGACTGGTGACAACCTTGCCATTGGGGACCGAGGTGGTCGTGTTATTATATTTGAGAGAAGGGACGGGAAGGATACTTCAAAAAACTACCCTACACGGAATAAGTTGGAGCAGTTGAATCTTACTCCCGCATGTCATCCTGAATACCAATACAAGACTGAATTTCAGAGTCATGAGCCTGAGTTTGATTACTTGAAGAGTTTGGAAATCGAAGAGAAGATTAATAAAATAAAGTGGTGTGTGTCACCCAATGGATCTCGCTTCATCCTTTCAACAAATGAAAAGACTATTAAATTATGGAAGGTTAAGGAGCATAAGGTGAAAACTGTTAAAGAGATGAACCCCAATCGATTTGTGAGTTCAGAGAATGCACTTTTGGCGGGAATCAGTTTCACTAGTGAACAAGACAAAGTATCTCTTTCCAATGGTTGCCATTGGAATTTGTCAGAGAATATGGCAACGAACAAGGTAGCCTCTAAAGACATTCATGACATGATTGCTGATCAAGACAACACTTCTCGGAGAAGATGCCGAAAGGTGTATGCTCATGCTCACGATTATAATATTAACTCCATTTCTAACAATAGTGATGGTGAGACATTTATTTCTGCAGACGACTTGCGAATAAACTTATGGAACCTTGAGATTAGTAATCAGTGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACAGAGATCATAACGTCGGCTGAATTCCATCCTCTGCATTGTAATCTTCTTGCGTACAGCAGCTCAAGGGGTTTTATTCGTCTAGTGGACATGCGCCAGTCTGCATTATGTGATGATAGTGCAATTCTGTTACGAACTGAAGAACTGAATCAACCAAAATCATTTTTTGCGGAGTTAATTTCATCCATTTCGGATATAAAATTTTCAAGTGATGGACGGTTTATCATTAGCCGGGATTACATGAATTTAAAGCTTTGGGATATCCACAAGTGCTCTTCCCCGGTTGCAGTTTTCAAGATCCACGAGCACCTGCGACCTAGGTTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGCCTCAGTGCAGACGGGCTTCACTTTGCAACTGGAACTTATAGCAACCAATTACGGATGTTCTCTTATGGCTCTGGAAGTTCAGAAGGGACCACTACAGAAGTGGGAAAGATTCCTGATAGGAAGCCACATCTCCAAACCACTCGGCGGGTGAGAAGATCGTCCTTAAGCAATTTGACACGTGATTTTTTTCGGCATGGCAATGAACATTCAAACTCGGACAATAACGAAACTTCTGTTGACCTGAACTCCAAGTTACTACATTCAGCGTGGCACCCATCCGAAAATTTAATCGCATGTGCTGCTGGAAGTGGTTTGTTCATCCATTATGCATAA 2400 43.54 MADLYGLHPLADNSYQSSSATTLGSFPLLANSPMASADYSHLLPAFESEYLRTVSSAACDTVAAAAEIETARANSEYSAGVIRAKIASHPLYPKLVDAFVNCQKVGVPPEFADIPDQNNRGSDIGEEISGVSNCLGVDPELDEFMETYYRILAKYELDLSQSFMEASSFLNNMGMQLNVLCNNDETAPKENISAGEVELQDSLVVPGNEDRELKDRLLREYGGHISSLKQEFSKTKKKANLPREAKQILLHWWNSHSQWPYPTDTEKVELAESTGLTRKQINNWSGIDVDMTVGNDSLCAPLEWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFERRDGKDTSKNYPTRNKLEQLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIKWCVSPNGSRFILSTNEKTIKLWKVKEHKVKTVKEMNPNRFVSSENALLAGISFTSEQDKVSLSNGCHWNLSENMATNKVASKDIHDMIADQDNTSRRRCRKVYAHAHDYNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDDSAILLRTEELNQPKSFFAELISSISDIKFSSDGRFIISRDYMNLKLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGTYSNQLRMFSYGSGSSEGTTTEVGKIPDRKPHLQTTRRVRRSSLSNLTRDFFRHGNEHSNSDNNETSVDLNSKLLHSAWHPSENLIACAAGSGLFIHYA 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28667260 28682633 + ClG42_06g0181300.10 Clacu06g1813 252461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1813 799 Gene3D - 601 793 IPR015943 GO:0005515(InterPro)
Clacu06g1813 799 ProSiteProfiles ELK domain profile. 212 232 IPR005539 GO:0003677(InterPro)
Clacu06g1813 799 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 392 406 IPR018067 -
Clacu06g1813 799 Pfam KNOX1 domain 82 113 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu06g1813 799 SMART HOX_1 234 292 IPR001356 GO:0003677(InterPro)
Clacu06g1813 799 Pfam KNOX2 domain 135 181 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu06g1813 799 CDD homeodomain 236 284 IPR001356 GO:0003677(InterPro)
Clacu06g1813 799 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 302 798 IPR000009 GO:0000159(PANTHER)|GO:0000159(InterPro)|GO:0005829(PANTHER)|GO:0019888(PANTHER)|GO:0019888(InterPro)
Clacu06g1813 799 SMART KNOX1_2 80 124 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu06g1813 799 SMART KNOX2_2 131 182 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu06g1813 799 Pfam Homeobox KN domain 252 284 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu06g1813 799 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 657 682 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Clacu06g1813 799 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 516 543 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Clacu06g1813 799 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 768 797 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Clacu06g1813 799 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 601 628 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Clacu06g1813 799 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 683 709 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Clacu06g1813 799 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 544 571 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Clacu06g1813 799 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 572 600 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Clacu06g1813 799 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 329 349 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Clacu06g1813 799 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 408 436 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Clacu06g1813 799 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 629 656 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Clacu06g1813 799 Gene3D - 220 287 - -
Clacu06g1813 799 SMART ELK_2 212 233 IPR005539 GO:0003677(InterPro)
Clacu06g1813 799 Gene3D - 360 600 IPR015943 GO:0005515(InterPro)
Clacu06g1813 799 Pfam ELK domain 212 233 IPR005539 GO:0003677(InterPro)
Clacu06g1813 799 ProSiteProfiles 'Homeobox' domain profile. 232 284 IPR001356 GO:0003677(InterPro)
Clacu06g1813 799 SMART WD40_4 315 350 IPR001680 GO:0005515(InterPro)
Clacu06g1813 799 SMART WD40_4 614 652 IPR001680 GO:0005515(InterPro)
Clacu06g1813 799 SMART WD40_4 679 710 IPR001680 GO:0005515(InterPro)
Clacu06g1813 799 SMART WD40_4 505 544 IPR001680 GO:0005515(InterPro)
Clacu06g1813 799 SMART WD40_4 392 432 IPR001680 GO:0005515(InterPro)
Clacu06g1813 799 SMART WD40_4 548 595 IPR001680 GO:0005515(InterPro)
Clacu06g1813 799 Pfam WD domain, G-beta repeat 509 544 IPR001680 GO:0005515(InterPro)
Clacu06g1813 799 SUPERFAMILY WD40 repeat-like 323 794 IPR036322 GO:0005515(InterPro)
Clacu06g1813 799 SUPERFAMILY Homeodomain-like 234 284 IPR009057 -
Clacu06g1813 799 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 320 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1813 K04354 - - csv:101206601 928.317
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1813 Clacu-Chr6:28667260 Clacu09g0053 Clacu-Chr9:565665 3.40E-164 dispersed
Clacu05g2747 Clacu-Chr5:34935468 Clacu06g1813 Clacu-Chr6:28667260 1.20E-62 wgd
Clacu06g1813 Clacu-Chr6:28667260 Clacu08g1940 Clacu-Chr8:28411673 2.90E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36