Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1817 ATGACATCAAGTATGTTGAGTGGAGAAAGAAGGTGGACATCAGCCAGACGAGGTGGGATGACAGTTTTAGGAAAGGTTGCTGTTCCAAAACCTATAAACTTACCCAGTCAAAGGTTAGAAAACCATGGTTTGGACCCTAATGTGGAAATTGTACCCAAGGGTACCCTCAGTTGGGGCAATAAATCAACTTCATCTGCAACAAATGCATGGGGTTCCGCATCTGTTTCTCCAAATACAGATAGTGCTTCTGGTTCACCAAGCCATCTCTGTGGTCGCCCTTCATCTGCTGGAGGTGGCACTCGTCCGTCAACAGCTGGCAGTGACAGGTCCCACGAACCTCATGCTAATGCATGGGGACCAAGTTCTAGACCATCATCTGCATCTGGACCTGTGACATTAAGCCATGCATCACTCACATCCTTGCGCCCTCACAGTGCCGAAACTAAATCTAGTAGCTCACAATTGTCACGATTTGCAGAGACTTCTGAAAATCCAGTGGCTTGGAATTCTGCTGTGACTACAGAGAAAGTGGGAACGATGCCATGCAAGAGTGATGGGTTTTCTTTGACGTCTGGAGATTTTCCTACACTGGGTTCAGAGAAAGAAAGTGTAGGAAAGGATGCTGAGTCACAAGATAATAGGTCTAATGGAGGAGCTACGATGAAAGAGAGGACTGAAACTTCGGCAATTGATGATCCTAAAAATGTGACCACAAGTGTTGCAAGTGCTAATTCCTGGAGAAGTGATAATCTTCCACACAACGATGATGGATCTAGGCCAAATGTAGAGAAATGGCTGGGGCATCCCCAACCTTACCCTGGTGCAAATATTCCTCCCCCACATTATGACGCCTGGCATGGTTCTCCAGTAAACAATCCTCAAGGTGGTGTATGGTATAGAGGTCCTCCACAAGGAGGTCCTCCATATCGAACTCCAGTTGCTCCTGGTAATTTCCCGCTGGATCCATTTATGTATTATCCTCCACAGATTCCCCCTGGTGGCCTCCCCAATCCCCAGCCTCCTCATGGAACTGGACCCAGGGGACACCATCCTAAAACTGGAGATATATACAGACCACCTATGCATGATGGTTTTATTCACCCAGGCATGTCAATTAGACCTGGATTTTACCCAGGGCCAGTTACCTATGATGGATATTTTCGACCTCCCATGGGCTACTGCAATTCAAATGATAGAGATGCTCCATTTATGGGACTGCCTGCTGGGCCTACTGGGCCTGCTGGACCTGCTGTTTACAACAGGTTCTTGGGCCAAGGCCAGAGTGCCTCTGAGCCTGCAAGTTCCCATGGCTTATCTAGTGGAAAGGGTATGGTTCCAGAACAAGCAGAATCTGGTCTTCCTTGTGATAATCAAGGACAATACAAGGTTCTTCTGAAGCAGCAGGGAAATGTAAATGGTAAGAACGAAGAAAAAAATATGATAAACTCAACAACCACTAATCAATTGATTCTTGAGAAGGCTGACCAACAGAGGGTGTCTCCATGGGAGAATGACTGGGAACATAAAAAGGAAGTTGATTTGAGGAGGAGAAAATTGGGGGTGGAACCGTATTCTCAGGCTTCTGCCAACCAAGAAGCTCAATCTTCTGAAAGTATGAAAGCCAAATCTCATGGAAACACGAGGACTGGTGATGGGTTACTAGAAAAATCGGATGCTGCTTCTTCTGGTTTCTCTGAAGTTCCCAAATCACTGGTTACTTCTGCAAAAGATTCAAGTCTGATTCAGAAGATAGAGGGATTAAATGCAAAAGCACGGGCTTCTGATGTGCGACATGATGGTGCCCCTATTTGTAGCAGGGATGAGCCAGATGAGTTTCAATCTGATGATAAGCACTCTGATCCTTTTGTTGCCCATGAAGTGGGTGTGAGTGCTGTTTTTCCTGAAAACAGAGATTTTAAAGAAGTCGTAGATCCTGCCTCCAGTGAATTGAGCTTGTCCACTGTAGATAGGAATGTTAAATTTCATGGTGGAGCACCTGTCCACAGGAGGCCTAATCGTGGAATGCAAGGGAGAAGTGATCATCATGGCCGAGGAAAAGGCAATGCACAGGAGGTAGATGGGTGGCATAAAAGACCTCTGTTGGACTCCCCAGGCATGATGGCAACTCCCAACCAGGAAAGTTTGGTGCTTGACAGGGACCACAATGCTTTAGGAGCTATCAATAAGGCCAAGCCATTTTCTTCAGATAGCCTTGGAGATGGGCCTGCCCCATCCATAGGTGATTCAAAAGATAGTCAAGCTCAGCGTACAAAGATGAGAGAGCTAGCAAAGCAACGCACCAAACAATTGCAGGAGGAAGAGGAGGAAAGGACTAGAAAACAGAGGGCTAGGGCCTTGGCAAAACTTGAAGAGTTGAACAGACGTACAGTAGCTGGGGAGGGGCCAAATCAGTGGTCTGACACTAATAATGATGCTATAAGAAATAAGATAGAAGAACCTCGCAATCCCAGTAATTCAAGAACGCTTGGTACTATATCTGGAGAGCATACCACAGTTTCTGATCTACATGTGGCTACTAATGATAGCGAGTCAACTGTGGGCACTAATAAAAATTCTCCCATTGTATCAGGAGATACATCATCGAAGAAACCAAGTAATGGCAACAAGGAACAGGTTGTGGCACATAATGAATTGAGATCTTTGGAGCAGGAGGTAAGTATTTCTGATGCTGCTCAAAATAAGAATGCTTCTGAGGTAAATGGGGGCAGTGCATCCTTGAAGCACAAGCGTACAGGAAATAAACAAAAACCAAATATTCCATCGGAAAAGATTCCCCATTTAATTAAGGAATCAAAAGGTCATTTAGTTGTAGCTGACATTCATACAGTTGCAGAGGAGTCGAGCAATATCATTACAGATTCTGTTGCTGAATTTTCAACACATACAAAAAAGAAAAATAACAAGAGTGGGAAGAACAGGCACAAAGTGGAAGAGGCCTTGATAACTGCATCATCACCTCAGATTTCAAAAGAAACAGATCTTATAACGGAATCTGATAAACCAAAGGCTTCTCAATCTGTAATGGATCCACCTTCAGATCCACAACAGCCAATTAATAGAGATGAAAATCAGTTCAGAGAGCAGCAACCTCTGTTACCAGTTGTAGAGACCCTTGGCAAAGGTAACGGTCAGTGGAAGTCTCAGCATTCTCGCAGGATGCCAAGAAATGCTCAAAATAGACCAGGAGAAAAGATCCATGGCAATGATTCTGTTGTCTGGGCCCCTGTGAGATCTCTCAACAAATGCGAGGTTACCGATGAAACTGTTCAGAAGAGTGAAGCAGAGTCTGTTGCTTCATCTGTAAAGACTGACAATCAAGTGCAGAATATTCCAAAAAATAAGCGAGCTGAAAGGGAGATATATGTACCGAAACCAGTAGCCAAAGAAATGGCGCAGCAAGGAACTATCCATCAAGATATTTCCCCTATGAACCAGGCACCTGATGATAATAAGGCAGATTCTAGTTCTCAAAGTTCTGATAATACTAGATCTGCTGGTGCTGTTTCTGTCAATGTGGGATTTTCCACAGATCACAGGAACGGGGATGGCAGGCACCATAAACAAAGCAAGGCACATTCATCATGGCGACAACGGGGAGCAACAGAATATGGGCAAGGCTTACAAGATCAATCTTCTTATGTTTCAAATGCTGGTAGTTATGTTCAAAAGTCAATTGAATATCAATTACCCGAGAAGGCTACCGGAAGCTCTGCCAATGAGTTCGCTGGTCTGGTTGATGAGTGGGATCCACCTGATGGATGGAATGATCCCAACTATTCAGCCTCTATCCAACCTGTCACTGCAGCTGTTGGGAGAGACCAGGGAGTGACAGGCAGGGGAAAACGATCCCAATCTAAGGGAAACAAGGCTGTAGGGAACAATTATGATTTAAATGACAAGAAACTTAGAAGCGGAGACAACGAAAAAATTTCTTCTGGATCTGAAGTGCTCGAGGCAGATCAAAAAGATGTATCTGCTGCTGCTGCTAAAGAAATTCGGGGTGTTGGGGAACGTTCAACATCTCATTGGCAACCCAAATCGCGGATGGTCCAACCTCACAGTAATCAAAATGTTGATGCTGAAGCTGCACAGGCTAATAAAATGGGACCTAGACAATCCTCACATCGCACAAAAACAAGTGATGATGTGGCCCAAAACCAGTATGATATGTCCACTGGTGCAAGAACCATCACAGAAGAGGGATCAATTGCTGGTCATCATGGGGCCAGGGGAGAGAAGAAAATTTCTTCCCGCAAGGAGCGTCCTTACTCCCCAAACCAAGGGCCTACCCATACAGTGGAGGTTGCTCCTGCAAATACAGATGTCAGACGTGAGCAACAGTTGCCTACGTTTTACCATAAAGGTGGTGAGAACAATAACCGTTATGGAAGAGGGTCGGAATCTCGTCGGGAAAGGAATAACTCTCAACATCATAAGCAGCAGCATTATCCACCTGCTAATAGAGACAGGCAAAGACAAAATCTGCAGTACGAGTACCAACCAGTTGGGCCACACAATAGTAAACCGAACATGGACAGACCTAAGGATACGACTCAGCATTCAGGCTCAAGGGCAGTAGGACTAGGAACCCGATTTGACGGTGCAGGAGAAAACTGTTTGGAGTTGGATGGAGGAGGATGGTCGGACTTGTTTATTTTGGCGTCATCTTCAACCTTCTTCACTTTCACAATCAATTGCCGAAGTCTCTATCTACGAAATGACCTGAATTCACATTCCACACCTTCCTCTTTGTCTCCTCTTTCCACTGGGATTTTTTGCACTGCAGGGACTCGCTTTTTCTTCAATTCTATCCAGTACCTCATGGATTCCACTGCTCTGGGTTCCATTACAACAACCTCGAGCCTTTTATCATGGAGCCAAGGATTGAAGTTGAAGCAATGTATAAAGACTTCAAATTTTTTTGGGAAAGCTGATAGGTGTATACTGTTAAAGCAAAAGATCCAGTTAAGTGTAGGGCCTCCGTCCAGATGTGGATCAAAATTTAAGCTTTTGAGAATATCAGCCTTCAAAAACAGCGTTCCAAATGGTGAACCTAGGAATGGAGAAAATCTGTCTGAAGTACCAAAGGATACAAGAGAAGATGGTGATGTTTCATCAAAAGTTACTTTGAAAGAAAATAATGTTGTACTATCTTCTACATCTGGAATAGTCAATTGGATTGCACCACACCCTTTTATTAATAAATTATTCAGGAAATGGCCGACAATGTTATGTAATCAACAAGCAAGTGAAGAAGTGGATGGGATTTTGGGAAGGATGTCGTTGAGTGAGAATTCAGCAACTCTACAAGAGGCTCATAATATGAAAAGACGTGAGAGCTTAGAAGCACTTTGGTACTACTTTCTCAGTCTGGATACCATGATTAAAATCCCTCTGTTGATGTTTGTTCCCTTGTATCTGACAATCAAAATCTCTTATGGAGCCCAAGTTTCAAAAGAACTGATGCCTTTGTGGGTGTTTGGGCCATTCATTGTAGCTTTCTACATCAAGATGTTTCACTGGTTGTGTTGTCTCTCAATCTTGAGCTTCAAGCAAACTGCATATTTGATGAAAAACTTTCCCTGTTATTACAAGCTAGCCTGTGACTATGTTTCCCATGGGAGACTTAAAGAGGTGATACAAGCTCGGGTCTGGGAACCTGTAGTGGATATTAGGAACCTCCATGATAAAGAGTTGTCGAGAAGAAAGTTCAAATTTATGCAAGAATGGATTATGGAGAGGTACCTGGAATTTCTAGAATTACTTGGGGTAGTTAAAAATGTAGCCGGAGCTGTTAAGTTCTATGATACTTGTAAGGCTGCTTCACTATTTCCAAATGTTTTGAAGAGGCCTCTCTTTGAATCAATTTCATTATCATTTTTGGCTCTCCTTTCTGTAGACTGTTCATGA 5931 43.84 MTSSMLSGERRWTSARRGGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGNKSTSSATNAWGSASVSPNTDSASGSPSHLCGRPSSAGGGTRPSTAGSDRSHEPHANAWGPSSRPSSASGPVTLSHASLTSLRPHSAETKSSSSQLSRFAETSENPVAWNSAVTTEKVGTMPCKSDGFSLTSGDFPTLGSEKESVGKDAESQDNRSNGGATMKERTETSAIDDPKNVTTSVASANSWRSDNLPHNDDGSRPNVEKWLGHPQPYPGANIPPPHYDAWHGSPVNNPQGGVWYRGPPQGGPPYRTPVAPGNFPLDPFMYYPPQIPPGGLPNPQPPHGTGPRGHHPKTGDIYRPPMHDGFIHPGMSIRPGFYPGPVTYDGYFRPPMGYCNSNDRDAPFMGLPAGPTGPAGPAVYNRFLGQGQSASEPASSHGLSSGKGMVPEQAESGLPCDNQGQYKVLLKQQGNVNGKNEEKNMINSTTTNQLILEKADQQRVSPWENDWEHKKEVDLRRRKLGVEPYSQASANQEAQSSESMKAKSHGNTRTGDGLLEKSDAASSGFSEVPKSLVTSAKDSSLIQKIEGLNAKARASDVRHDGAPICSRDEPDEFQSDDKHSDPFVAHEVGVSAVFPENRDFKEVVDPASSELSLSTVDRNVKFHGGAPVHRRPNRGMQGRSDHHGRGKGNAQEVDGWHKRPLLDSPGMMATPNQESLVLDRDHNALGAINKAKPFSSDSLGDGPAPSIGDSKDSQAQRTKMRELAKQRTKQLQEEEEERTRKQRARALAKLEELNRRTVAGEGPNQWSDTNNDAIRNKIEEPRNPSNSRTLGTISGEHTTVSDLHVATNDSESTVGTNKNSPIVSGDTSSKKPSNGNKEQVVAHNELRSLEQEVSISDAAQNKNASEVNGGSASLKHKRTGNKQKPNIPSEKIPHLIKESKGHLVVADIHTVAEESSNIITDSVAEFSTHTKKKNNKSGKNRHKVEEALITASSPQISKETDLITESDKPKASQSVMDPPSDPQQPINRDENQFREQQPLLPVVETLGKGNGQWKSQHSRRMPRNAQNRPGEKIHGNDSVVWAPVRSLNKCEVTDETVQKSEAESVASSVKTDNQVQNIPKNKRAEREIYVPKPVAKEMAQQGTIHQDISPMNQAPDDNKADSSSQSSDNTRSAGAVSVNVGFSTDHRNGDGRHHKQSKAHSSWRQRGATEYGQGLQDQSSYVSNAGSYVQKSIEYQLPEKATGSSANEFAGLVDEWDPPDGWNDPNYSASIQPVTAAVGRDQGVTGRGKRSQSKGNKAVGNNYDLNDKKLRSGDNEKISSGSEVLEADQKDVSAAAAKEIRGVGERSTSHWQPKSRMVQPHSNQNVDAEAAQANKMGPRQSSHRTKTSDDVAQNQYDMSTGARTITEEGSIAGHHGARGEKKISSRKERPYSPNQGPTHTVEVAPANTDVRREQQLPTFYHKGGENNNRYGRGSESRRERNNSQHHKQQHYPPANRDRQRQNLQYEYQPVGPHNSKPNMDRPKDTTQHSGSRAVGLGTRFDGAGENCLELDGGGWSDLFILASSSTFFTFTINCRSLYLRNDLNSHSTPSSLSPLSTGIFCTAGTRFFFNSIQYLMDSTALGSITTTSSLLSWSQGLKLKQCIKTSNFFGKADRCILLKQKIQLSVGPPSRCGSKFKLLRISAFKNSVPNGEPRNGENLSEVPKDTREDGDVSSKVTLKENNVVLSSTSGIVNWIAPHPFINKLFRKWPTMLCNQQASEEVDGILGRMSLSENSATLQEAHNMKRRESLEALWYYFLSLDTMIKIPLLMFVPLYLTIKISYGAQVSKELMPLWVFGPFIVAFYIKMFHWLCCLSILSFKQTAYLMKNFPCYYKLACDYVSHGRLKEVIQARVWEPVVDIRNLHDKELSRRKFKFMQEWIMERYLEFLELLGVVKNVAGAVKFYDTCKAASLFPNVLKRPLFESISLSFLALLSVDCS 1976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28718037 28731769 - ClG42_06g0181700.10 Clacu06g1817 252465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 987 1027 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 815 878 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 56 90 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 753 783 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1470 1493 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1688 1711 - -
Clacu06g1817 1976 CDD UDM1_RNF168_RNF169-like 753 795 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 231 251 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 822 878 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 119 163 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 524 545 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1047 1074 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 522 566 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 178 280 - -
Clacu06g1817 1976 Pfam BAT2 N-terminus 13 135 IPR009738 -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1306 1323 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 54 163 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 661 691 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1406 1535 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 896 915 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1147 1214 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1048 1062 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1276 1394 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1494 1510 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1697 1711 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1412 1427 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 673 691 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1006 1027 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 331 345 - -
Clacu06g1817 1976 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1530 IPR038808 GO:0040029(PANTHER)
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 896 928 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1147 1183 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 427 456 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 729 783 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1347 1394 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 1285 1299 - -
Clacu06g1817 1976 Coils Coil 756 795 - -
Clacu06g1817 1976 MobiDBLite consensus disorder prediction 331 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1817 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1377 Clacu-Chr1:25102920 Clacu06g1817 Clacu-Chr6:28718037 4.00E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39