Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1822 ATGCCTGTAAATTCATGGACCCTCCCCTCATCTATCCTAATCCTCTGTTTTTCAGTCTTATATCCCTTCCTTTCTCTAAGAACTTCCGCCATTAATGAACAGGGTCAAGCTCTACTCAATTGGAAGCTAAGTTTGAATGGATCAAACGAGGCTCTATATAATTGGAACCCCAAAAATGAAAATCCATGTGGGTGGTTTGGAATCACTTGCAACAGAAACAGAGAAGTAGTGGAAGTAGTACTGAGGTATGTGAACTTACCTGGAAAGCTTCCGTTGAATTTCTCTCCATTGTCATCCTTGAACAGGCTCGTCTTGTCTGGAGTGAACCTCACTGGTTCAATTCCTAAAGAGATCGGTGGTCTTACCCAGCTGCATACCTTGGAACTCAGTGACAATGGCCTAACTGGAGCAATCCCAAGTGAAATATGCGCTTTGGTAAATCTCGAACAGCTTTACCTGAATTCGAACCAACTCGAAGGGTCAATACCTGCAGGGATCGGGAATCTTACAAATTTAAAGGAGCTCATTCTCTATGACAATCAGTTAAGTGGTGAAATTCCAATTAGTATAGGAAACTTGAAGCAGCTTGAAGTGATTAGAGCCGGAGGAAACAAGAACTTACTTGGTCCTGTGCCGGAAGAAATTGGTAATTGTAGCAGTTTGGTGATTCTTGGTTTGGCTGAAACAAGCATCTCCGGCTTTCTTCCAGCTAGTCTTGGCCGGCTCAAGAAACTTCAAACATTAGCAATCTATACTGCACTTCTCTCCGGCCAGATTCCTCATGAACTTGGCGACTGCACTGAGCTTCAAAACATCTATCTCTATGAGAACTCGCTCTCCGGCTCGATCCCCAGCTCGTTAGGAAGGTTAAAAAATCTTCAGAGTGTGCTAATATGGCAGAACAATTTGGTCGGTGTTATACCGTCGGAGCTAGGTTGGTGTGACCAATTATTCGTCATCGACCTTTCAATTAATTCCCTGACGGGAAACATTCCTTCGACATTTGGGAACTTAACATTGCTCCAAGAATTGCAACTGAGTACTAATCAATTATCCGGTGAGATACCGAAGGAGATCGGAAACTGTCTGAGAATCACTCACATCGAGCTTGATAATAATCAGCTCACTGGTACGATTCCCTCTGAATTGGGAAATCTCACCAATCTTACATTGCTTTTCTTGTGGCAAAACAAGCTCGAGGGAAGTATTCCGCCCACCATTTCGAATTGTCGCAATCTCGAGGCGTTGGATTTATCACTGAATGCCTTGACAGGTTCAGTTCCGACGGGAATTTTCCAGTTGAAGAAACTCTCCAAGCTTCTGCTCCTTTCCAACAACCTCTCCGGTGTGATACCGCCGACAATAGGTAATTGTTCGTCTCTGTTTCGGTTTCGAGCTAATAACAACAAGCTCGCCGGAGAAATTCCGCCGGAGATTGGAAATTTGAAGAAGTTGGTTTTTCTAGACCTCGGAAACAATCACCTCACTGGAGCGTTGCCTCCGGAGATTTCCGGCTGTCGAAATTTGACGTTCCTCGATTTGCATTCCAACTCCCTAAAATTTCTTCCAGAAGAATTCGGCCAGCTTTCTTCCCTCCAGTACGTTGATCTCTCAAATAATTTAATCGAAGGGACGCCGAATCCGAGTTTTGGATCTTTCAACTCGCTCACGAAACTCGTTCTCTCAAACAACCGCTTCTCGGGGCCTATACCGACTGAAATCGGTTCTTGCTTGAAACTTCAGTTACTGGATTTGAGTTGCAATCAGCTTTCCGGAAACATTCCTTCAAGCTTAGGCAAGATTCCTTCATTAGAAATTGGTCTCAATCTGAGCTTAAACCAACTAACCGGCGAGATTCCGTCGGAGTTTGCAAATTTTAACAAGCTAGGGTCATTGGACCTCTCTTACAACCAACTCTCTGGCGACCTCCACATTCTCACAGACCTGCAGAATCTCGTAGTCCTCAATGTATCCCACAACAATTTCTCAGGACGCGTACCAGAGACGCCATTCTTCACGCAACTCCCTCTGAGCGTCCTCTCGGGTAACCCGGACTTGTGCTTCGCCGGCGAAAAATGCTACAGAGACAACCACAGCAGCGGCGGTCGCCACACGCTAGCGGCTCGAGTGGCCATGGTGGTGTTACTGTGCACTGCGTGCGCACTGCTATTAGCAGCAGTTTATATCATTCTCAAAGATAGACATTCATGTCGAAGATGCTTCAATGGGTCCCGCGATGAAGATCCAGACGCCGCCTTCGATAGCGACTTGGAGCTTGGCTCAGGTTGGGAAGTGACATTATACCAGAAGCTCGATCTCTCAATCTCTGACGTAATCAAGTGCTTAACGCCGGCCAATGTCATCGGCCGCGGCAAGACCGGCGTGGTGTACAGAGCCTGCATCTCATCAGGTCTAATAATCGCCGTGAAGCGATTCCGATCATCGGATAAATTCTCGGCAGCGGCGTTTTCATCCGAAATCGCAACATTGGCGAGGATCCGGCACCGGAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAGTTGCTGTTCTACGATTACTTGCCAAATGGGAATTTGGGCGCGTTATTACACGAAGGGAATGGGCGCATGGGGCTGGACTGGGACAGTAGATTCAAGATAGCGCTGGGAGTGGCGGAGGGATTGGCTTATTTGCACCACGATTGCGTGCCGGCGATATTGCACCGGGACGTTAAGGCTCACAATATTCTGTTAGGGGATCGCTACGAGGCGTGTTTAGCGGACTTTGGGCTCGCCCGCTTGGTCGAAGATGGTCCAAGCGGTTCGTCTTCCGCGAACCCCCAGTTCGCTGGCTCCTACGGCTATTTTGCACCTGAATACGGGTGTATGCTAAGGATCACCGAAAAGAGTGATGTGTATAGCTACGGCGTCGTTTTGCTAGAGATAATAACAGGCAAAAAGCCAGCGGATTCGTCATTTGCCGAGGGCCAGCACGTGATTCAATGGGTGAGAGACCATTTAAAGAAGAAGAAGGATCCGGTTTTGATATTGGATCCGAAACTTCAGGGTCAACCCGACCCGCAGATCCAGGAGATTCTACAAGCATTAGGAATCTCTTTACTCTGCACCAGCGACCGCTCCGAAGACCGGCCGACGATGAAAGACGTCGCGGCTCTTTTACGAGAGATCCAACAGGACCAGCCGGCGACAGCGGCGGAGGCCGCCGACAAGCCGCCACGAAAGAATAGCAACGCGACAAGCTTTGATACAACGACGTCGTTTTCGTCTTCGTCTTCTACGGCTCCTGCGAGTCATTTGCTTTTCACTTTGCCCCTTCAAGAATCGTCGCGTTGTTCTTATGCTTCGTTGTCATCGTCTGGCGCGTATATTCCACGCAAGCAATAA 3396 48.09 MPVNSWTLPSSILILCFSVLYPFLSLRTSAINEQGQALLNWKLSLNGSNEALYNWNPKNENPCGWFGITCNRNREVVEVVLRYVNLPGKLPLNFSPLSSLNRLVLSGVNLTGSIPKEIGGLTQLHTLELSDNGLTGAIPSEICALVNLEQLYLNSNQLEGSIPAGIGNLTNLKELILYDNQLSGEIPISIGNLKQLEVIRAGGNKNLLGPVPEEIGNCSSLVILGLAETSISGFLPASLGRLKKLQTLAIYTALLSGQIPHELGDCTELQNIYLYENSLSGSIPSSLGRLKNLQSVLIWQNNLVGVIPSELGWCDQLFVIDLSINSLTGNIPSTFGNLTLLQELQLSTNQLSGEIPKEIGNCLRITHIELDNNQLTGTIPSELGNLTNLTLLFLWQNKLEGSIPPTISNCRNLEALDLSLNALTGSVPTGIFQLKKLSKLLLLSNNLSGVIPPTIGNCSSLFRFRANNNKLAGEIPPEIGNLKKLVFLDLGNNHLTGALPPEISGCRNLTFLDLHSNSLKFLPEEFGQLSSLQYVDLSNNLIEGTPNPSFGSFNSLTKLVLSNNRFSGPIPTEIGSCLKLQLLDLSCNQLSGNIPSSLGKIPSLEIGLNLSLNQLTGEIPSEFANFNKLGSLDLSYNQLSGDLHILTDLQNLVVLNVSHNNFSGRVPETPFFTQLPLSVLSGNPDLCFAGEKCYRDNHSSGGRHTLAARVAMVVLLCTACALLLAAVYIILKDRHSCRRCFNGSRDEDPDAAFDSDLELGSGWEVTLYQKLDLSISDVIKCLTPANVIGRGKTGVVYRACISSGLIIAVKRFRSSDKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGALLHEGNGRMGLDWDSRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEACLADFGLARLVEDGPSGSSSANPQFAGSYGYFAPEYGCMLRITEKSDVYSYGVVLLEIITGKKPADSSFAEGQHVIQWVRDHLKKKKDPVLILDPKLQGQPDPQIQEILQALGISLLCTSDRSEDRPTMKDVAALLREIQQDQPATAAEAADKPPRKNSNATSFDTTTSFSSSSSTAPASHLLFTLPLQESSRCSYASLSSSGAYIPRKQ 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28774407 28779809 - ClG42_06g0182200.10 Clacu06g1822 252470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1822 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 903 915 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1822 1131 MobiDBLite consensus disorder prediction 1077 1098 - -
Clacu06g1822 1131 Pfam Leucine Rich Repeat 651 669 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Pfam Leucine Rich Repeat 484 506 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Pfam Leucine Rich Repeat 579 600 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Pfam Leucine Rich Repeat 171 193 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Pfam Leucine Rich Repeat 341 362 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Pfam Leucine Rich Repeat 317 338 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Pfam Leucine Rich Repeat 269 290 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Pfam Leucine Rich Repeat 608 626 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Pfam Leucine Rich Repeat 388 410 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Pfam Leucine Rich Repeat 365 386 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Pfam Leucine Rich Repeat 124 145 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Gene3D Transferase(Phosphotransferase) domain 1 858 1084 - -
Clacu06g1822 1131 MobiDBLite consensus disorder prediction 1064 1098 - -
Clacu06g1822 1131 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Clacu06g1822 1131 FunFam Predicted protein 187 283 - -
Clacu06g1822 1131 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 284 377 - -
Clacu06g1822 1131 Pfam Leucine rich repeat 507 566 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 Pfam Protein kinase domain 786 1053 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1822 1131 ProSitePatterns Protein kinases ATP-binding region signature. 788 810 IPR017441 GO:0005524(InterPro)
Clacu06g1822 1131 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 467 1058 IPR051716 -
Clacu06g1822 1131 Gene3D Ribonuclease Inhibitor 366 433 IPR032675 -
Clacu06g1822 1131 Gene3D Ribonuclease Inhibitor 434 695 IPR032675 -
Clacu06g1822 1131 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 412 697 - -
Clacu06g1822 1131 ProSiteProfiles Leucine-rich repeat profile. 628 650 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 SUPERFAMILY L domain-like 52 399 - -
Clacu06g1822 1131 Gene3D Ribonuclease Inhibitor 30 180 IPR032675 -
Clacu06g1822 1131 ProSiteProfiles Leucine-rich repeat profile. 508 529 IPR001611 GO:0005515(InterPro)
Clacu06g1822 1131 SUPERFAMILY RNI-like 331 669 - -
Clacu06g1822 1131 ProSiteProfiles Protein kinase domain profile. 782 1067 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1822 1131 SMART serkin_6 782 1077 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1822 1131 SUPERFAMILY Protein kinase-like (PK-like) 774 1057 IPR011009 -
Clacu06g1822 1131 SMART LRR_typ_2 386 410 IPR003591 -
Clacu06g1822 1131 SMART LRR_typ_2 290 314 IPR003591 -
Clacu06g1822 1131 SMART LRR_typ_2 338 362 IPR003591 -
Clacu06g1822 1131 SMART LRR_typ_2 529 552 IPR003591 -
Clacu06g1822 1131 SMART LRR_typ_2 121 144 IPR003591 -
Clacu06g1822 1131 SMART LRR_typ_2 411 434 IPR003591 -
Clacu06g1822 1131 SMART LRR_typ_2 482 506 IPR003591 -
Clacu06g1822 1131 SMART LRR_typ_2 145 168 IPR003591 -
Clacu06g1822 1131 SMART LRR_typ_2 169 193 IPR003591 -
Clacu06g1822 1131 SMART LRR_typ_2 507 528 IPR003591 -
Clacu06g1822 1131 SMART LRR_typ_2 649 682 IPR003591 -
Clacu06g1822 1131 SMART LRR_typ_2 553 577 IPR003591 -
Clacu06g1822 1131 FunFam Nuclear pore complex protein NUP107 31 186 - -
Clacu06g1822 1131 Gene3D Ribonuclease Inhibitor 287 365 IPR032675 -
Clacu06g1822 1131 Gene3D Ribonuclease Inhibitor 181 286 IPR032675 -
Clacu06g1822 1131 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 858 1074 - -
Clacu06g1822 1131 Gene3D Phosphorylase Kinase; domain 1 766 857 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0787 Clacu-Chr6:9299984 Clacu06g1822 Clacu-Chr6:28774407 9.30E-99 dispersed
Clacu06g1822 Clacu-Chr6:28774407 Clacu09g0984 Clacu-Chr9:9259670 3.70E-100 dispersed
Clacu09g2177 Clacu-Chr9:36499694 Clacu06g1822 Clacu-Chr6:28774407 2.40E-16 transposed
Clacu01g1382 Clacu-Chr1:25137418 Clacu06g1822 Clacu-Chr6:28774407 1.80E-144 wgd
Clacu06g1822 Clacu-Chr6:28774407 Clacu08g1938 Clacu-Chr8:28402653 6.50E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73670 PF00069 Pkinase 3.30E-39 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1822 - - - 0.0