Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1830 ATGGTGGGTTCGGTAGGTTTGTGTCAGCCTAGCCTAGTTGCAATGTACAGGGTTTTGCTTCACTCTTCTTCATCAGATCAGCTCTTAAACCAAACCTCAAAAATTTTTAGTTTATCAAAAGGAAAGGAAGAAAAGGGGTTTAAAGCTTTCTTACTTGAAAGGGCAAGGATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCCAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCTGTGAACTCTCTTGCCTATGAGGCTGAGGCCCGAGTTCGGGACCCGGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTCCAAAGGCAAGTTCAAAGGCTCCAAAAGGAACTCGACGCTGCGAATGCTGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAACCTTGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA 723 45.09 MVGSVGLCQPSLVAMYRVLLHSSSSDQLLNQTSKIFSLSKGKEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28860152 28863127 - ClG42_06g0183000.10 Clacu06g1830 252478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1830 240 Pfam Lateral organ boundaries (LOB) domain 66 163 IPR004883 -
Clacu06g1830 240 Coils Coil 145 172 - -
Clacu06g1830 240 ProSiteProfiles LOB domain profile. 65 166 IPR004883 -
Clacu06g1830 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 64 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1830 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1830 Clacu-Chr6:28860152 Clacu11g1302 Clacu-Chr11:22050335 8.60E-47 dispersed
Clacu09g0071 Clacu-Chr9:697441 Clacu06g1830 Clacu-Chr6:28860152 1.10E-22 transposed
Clacu01g1388 Clacu-Chr1:25208404 Clacu06g1830 Clacu-Chr6:28860152 1.80E-51 wgd
Clacu10g1381 Clacu-Chr10:26924184 Clacu06g1830 Clacu-Chr6:28860152 3.50E-56 wgd
Clacu06g1830 Clacu-Chr6:28860152 Clacu09g1968 Clacu-Chr9:34538593 1.80E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g801 . . . Bda15g00546 Bpe12g00665 Bpe13g00250 Bma06g00210 Bma12g01049 Cmo13g00898 Cmo18g00146 Cma10g00105 Cma11g00077 Car10g00093 Car11g00069 Sed08g0088 Cpe20g00259 Cpe04g01574 Bhi02g00500 Tan09g2289 Cmetu02g1623 . Hepe09g0225 . . Cla06g01688 Cam06g1875 Cec06g1923 Cco06g1928 Clacu06g1830 Cmu06g1772 Cre06g2588 . Cone16ag0081 Cone13ag0160 Cone19ag0159 Lsi02g00402 Csa01g00875 Chy12g01247 Cme12g01670 Blo13g00135 Blo15g00256 Bda11g01663 . Bpe07g00855 . . Bma08g00088 Sed08g2530 Cmo10g00109 Cmo11g00077 Cma13g00866 Cma18g00185 Car13g00709 Car18g00177 Cpe09g01010 Cpe18g00859 Bhi08g01650 Tan05g1980 Cmetu12g0285 Lac10g0481 Hepe07g2205 . . Cla01g01323 Cam01g1406 Cec01g1438 . Clacu01g1388 Cmu01g1297 Cre01g1243 Lsi06g01582 Csa01g00123 Chy02g02604 Cme02g02002
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu11g1302 . 1 218 AS2 family AT1G65620 66.4 1.8e-69 259.2
Clacu02g1367 . 2 110 AS2 family AT1G65620 79.8 2.1e-46 182.6
Clacu06g1830 . 59 234 AS2 family AT1G65620 54.0 2.1e-46 182.6
Clacu10g1381 . 18 128 AS2 family AT1G65620 70.3 2.2e-43 172.6
Clacu09g1968 . 1 117 AS2 family AT1G65620 69.2 1.8e-42 169.5
Clacu01g1388 . 3 118 AS2 family AT1G65620 69.0 8.5e-40 160.6
Clacu11g0751 . 9 135 AS2 family AT1G65620 55.1 1.1e-36 150.2
Clacu02g1367 . 1 122 AS2 family AT5G66870 85.2 3.5e-56 215.7
Clacu11g1302 . 5 112 AS2 family AT5G66870 77.8 1.2e-43 174.1
Clacu01g1388 . 14 131 AS2 family AT5G66870 65.3 1.7e-39 160.2
Clacu06g1830 . 57 169 AS2 family AT5G66870 68.1 2.3e-39 159.8
Clacu10g1381 . 22 128 AS2 family AT5G66870 68.2 3.0e-39 159.5
Clacu09g1968 . 1 121 AS2 family AT5G66870 62.8 1.9e-38 156.8
Clacu02g1367 . 4 118 AS2 family AT2G23660 68.7 8.9e-44 174.5
Clacu11g1302 . 6 112 AS2 family AT2G23660 69.2 7.8e-40 161.4
Clacu06g1830 . 64 169 AS2 family AT2G23660 64.2 1.9e-38 156.8
Clacu10g1381 . 22 138 AS2 family AT2G23660 58.1 2.1e-37 153.3
Clacu01g1388 . 14 130 AS2 family AT2G23660 63.9 2.8e-37 152.9
Clacu09g1968 . 4 127 AS2 family AT3G27650 78.6 1.8e-53 205.7
Clacu10g1381 . 19 129 AS2 family AT3G27650 84.7 2.0e-52 202.2
Clacu06g1830 . 60 170 AS2 family AT3G27650 78.4 2.0e-47 185.7
Clacu01g1388 . 14 119 AS2 family AT3G27650 73.6 3.3e-42 168.3
Clacu11g1302 . 3 112 AS2 family AT3G27650 68.2 9.5e-42 166.8
Clacu02g1367 . 4 112 AS2 family AT3G27650 66.1 9.8e-39 156.8
Clacu06g1830 . 59 169 AS2 family AT5G63090 93.7 4.2e-57 218.0
Clacu10g1381 . 17 140 AS2 family AT5G63090 77.4 1.5e-51 199.5
Clacu09g1968 . 1 113 AS2 family AT5G63090 86.0 1.7e-50 196.1
Clacu01g1388 . 12 118 AS2 family AT5G63090 81.3 3.6e-48 188.3
Clacu11g1302 . 3 122 AS2 family AT5G63090 70.8 2.2e-45 179.1
Clacu02g1367 . 2 110 AS2 family AT5G63090 68.8 3.0e-39 158.7
Clacu01g0907 . 16 143 AS2 family AT5G63090 59.4 3.3e-38 155.2
Clacu02g1901 . 14 117 AS2 family AT5G63090 67.3 1.3e-37 153.3
Clacu07g0465 . 4 106 AS2 family AT5G63090 69.9 1.3e-37 153.3
Clacu11g0751 . 10 129 AS2 family AT5G63090 60.0 8.2e-37 150.6
Clacu07g0465 . 3 114 AS2 family AT2G30130 92.0 2.6e-54 208.8
Clacu02g1981 . 2 137 AS2 family AT2G30130 68.8 1.5e-49 193.0
Clacu01g0907 . 11 117 AS2 family AT2G30130 77.6 1.7e-45 179.5
Clacu02g1901 . 10 125 AS2 family AT2G30130 72.4 8.5e-45 177.2
Clacu09g2278 . 21 122 AS2 family AT2G30130 72.5 1.4e-39 159.8
Clacu06g1830 . 64 167 AS2 family AT2G30130 68.3 1.3e-37 153.3
Clacu10g1381 . 23 135 AS2 family AT2G30130 61.9 8.5e-37 150.6
Clacu11g1302 . 7 109 AS2 family AT2G30130 67.0 8.5e-37 150.6
Clacu01g0907 . 4 172 AS2 family AT1G31320 74.3 2.7e-66 248.4
Clacu02g1901 . 1 171 AS2 family AT1G31320 71.7 2.2e-60 228.8
Clacu07g0465 . 2 132 AS2 family AT1G31320 66.2 2.9e-44 175.3
Clacu02g1981 . 6 122 AS2 family AT1G31320 67.5 1.0e-41 166.8
Clacu09g2278 . 21 124 AS2 family AT1G31320 73.1 1.3e-41 166.4
Clacu06g1830 . 65 176 AS2 family AT1G31320 62.5 7.6e-37 150.6
Clacu03g0243 . 34 202 AS2 family AT2G28500 55.2 5.4e-46 181.4
Clacu03g0241 . 13 128 AS2 family AT2G28500 70.7 1.0e-44 177.2
Clacu02g2145 . 31 196 AS2 family AT2G28500 53.3 1.6e-42 169.9
Clacu02g1426 . 27 118 AS2 family AT2G28500 88.0 3.6e-42 168.7
Clacu02g1901 . 13 122 AS2 family AT2G28500 66.4 6.0e-37 151.4
Clacu07g0465 . 5 115 AS2 family AT2G28500 64.9 6.0e-37 151.4
Clacu02g2145 . 4 196 AS2 family AT1G07900 60.9 4.9e-45 177.9
Clacu03g0243 . 28 202 AS2 family AT1G07900 56.8 4.2e-44 174.9
Clacu02g1426 . 27 181 AS2 family AT1G07900 68.8 7.1e-44 174.1
Clacu03g0241 . 13 128 AS2 family AT1G07900 67.2 3.3e-41 165.2
Clacu02g1901 . 6 171 AS2 family AT1G16530 57.6 7.8e-47 183.7
Clacu01g0907 . 12 172 AS2 family AT1G16530 53.3 2.2e-41 165.6
Clacu02g1981 . 2 161 AS2 family AT1G16530 51.8 1.3e-38 156.4
Clacu07g0465 . 5 110 AS2 family AT1G16530 68.2 2.5e-37 152.1
Clacu07g0508 . 1 157 AS2 family AT2G30340 66.5 9.7e-55 210.7
Clacu11g0724 . 12 156 AS2 family AT2G30340 69.6 1.4e-53 206.8
Clacu07g0508 . 32 157 AS2 family AT2G40470 82.5 5.5e-55 211.1
Clacu11g0724 . 29 153 AS2 family AT2G40470 77.6 6.3e-51 197.6
Clacu02g1901 . 11 131 AS2 family AT2G40470 62.0 7.7e-41 164.1
Clacu01g0907 . 17 124 AS2 family AT2G40470 65.7 4.7e-38 154.8
Clacu11g0751 . 1 162 AS2 family AT3G11090 60.4 3.2e-48 188.3
Clacu07g0084 . 1 113 AS2 family AT2G42440 74.3 4.1e-44 175.3
Clacu09g0797 . 9 118 AS2 family AT2G42440 71.8 3.2e-41 165.6
Clacu07g0083 . 25 132 AS2 family AT2G42440 70.4 4.0e-39 158.7
Clacu06g0035 . 29 138 AS2 family AT2G42440 65.2 2.8e-37 152.5
Clacu09g0797 . 4 126 AS2 family AT3G58190 75.2 5.4e-48 188.0
Clacu07g0084 . 4 115 AS2 family AT3G58190 79.5 7.8e-47 184.1
Clacu07g0083 . 25 132 AS2 family AT3G58190 71.3 1.3e-41 166.8
Clacu06g0035 . 29 127 AS2 family AT3G58190 74.7 5.4e-40 161.4
Clacu07g0084 . 1 171 AS2 family AT2G31310 51.6 6.1e-40 161.0
Clacu07g0083 . 25 235 AS2 family AT2G42430 55.2 1.0e-55 213.8
Clacu06g0035 . 29 131 AS2 family AT2G42430 74.8 9.4e-41 164.1
Clacu07g0084 . 3 94 AS2 family AT2G42430 80.4 6.8e-39 157.9
Clacu09g0797 . 12 114 AS2 family AT2G42430 70.9 7.5e-38 154.5
Clacu05g0254 . 47 151 AS2 family AT2G42430 66.7 1.3e-37 153.7
Clacu06g0035 . 29 222 AS2 family AT4G00220 63.6 2.9e-60 228.8
Clacu05g0254 . 49 212 AS2 family AT4G00220 54.8 6.5e-44 174.5
Clacu06g0036 . 28 211 AS2 family AT4G00220 51.0 4.5e-37 151.8
Clacu06g0035 . 29 240 AS2 family AT2G45420 69.0 2.9e-72 268.9
Clacu05g0254 . 49 205 AS2 family AT2G45420 60.0 1.1e-50 197.2
Clacu07g0083 . 26 128 AS2 family AT2G45420 77.7 4.1e-42 168.7
Clacu09g0797 . 12 118 AS2 family AT2G45420 70.1 2.2e-40 162.9
Clacu10g1569 . 37 126 AS2 family AT2G45420 80.0 8.0e-38 154.5
Clacu06g0036 . 28 114 AS2 family AT2G45420 80.5 5.2e-37 151.8
Clacu07g0084 . 7 95 AS2 family AT2G45420 76.4 1.2e-36 150.6
Clacu10g1569 . 37 150 AS2 family AT3G03760 80.7 3.2e-45 179.1
Clacu06g0035 . 29 130 AS2 family AT3G03760 80.4 2.3e-40 162.9
Clacu07g0083 . 25 127 AS2 family AT3G03760 74.8 6.4e-38 154.8
Clacu06g0035 . 29 139 AS2 family AT4G00210 73.0 1.4e-43 173.3
Clacu05g0254 . 47 163 AS2 family AT4G00210 64.1 6.5e-41 164.5
Clacu09g0797 . 12 116 AS2 family AT4G00210 65.7 3.3e-37 152.1
Clacu06g0035 . 29 224 AS2 family AT2G45410 51.0 1.8e-47 186.0
Clacu05g0254 . 46 168 AS2 family AT2G45410 63.7 3.0e-42 168.7
Clacu07g0083 . 26 128 AS2 family AT2G45410 67.0 1.7e-37 152.9
Clacu07g0337 . 12 154 AS2 family AT5G06080 60.3 1.5e-43 172.9
Clacu09g0071 . 31 138 AS2 family AT3G13850 75.9 6.5e-43 171.4
Clacu05g1330 . 1 166 AS2 family AT1G68510 64.4 4.3e-59 224.9
Clacu06g1588 . 1 159 AS2 family AT1G68510 61.8 1.1e-54 210.3
Clacu05g2466 . 1 171 AS2 family AT1G68510 58.9 4.3e-51 198.4
Clacu01g1814 . 1 104 AS2 family AT1G68510 64.4 7.6e-40 161.0
Clacu05g1330 . 1 302 AS2 family AT1G67100 50.2 2.2e-71 265.8
Clacu06g1588 . 1 140 AS2 family AT1G67100 72.5 1.3e-60 229.9
Clacu05g2466 . 1 132 AS2 family AT1G67100 68.6 5.1e-52 201.4
Clacu01g1814 . 1 110 AS2 family AT1G67100 67.3 1.7e-44 176.4
Clacu05g1330 . 1 302 AS2 family AT3G02550 55.6 9.4e-79 290.4
Clacu06g1588 . 1 163 AS2 family AT3G02550 69.5 5.0e-64 241.5
Clacu05g2466 . 1 141 AS2 family AT3G02550 63.4 1.9e-47 186.4
Clacu01g1814 . 1 136 AS2 family AT3G02550 55.1 5.0e-40 161.8
Clacu01g1814 . 1 235 AS2 family AT5G67420 58.8 8.9e-71 263.8
Clacu05g1330 . 3 112 AS2 family AT5G67420 68.2 1.1e-44 177.2
Clacu06g1588 . 3 112 AS2 family AT5G67420 61.8 2.1e-40 162.9
Clacu05g2248 . 1 108 AS2 family AT5G67420 63.2 3.7e-40 162.2
Clacu05g2466 . 3 113 AS2 family AT5G67420 62.5 4.0e-39 158.7
Clacu01g1814 . 1 234 AS2 family AT3G49940 60.5 5.2e-71 264.6
Clacu05g1330 . 3 157 AS2 family AT3G49940 52.9 4.9e-45 178.3
Clacu06g1588 . 3 112 AS2 family AT3G49940 62.7 1.6e-40 163.3
Clacu05g2466 . 3 113 AS2 family AT3G49940 62.5 7.5e-38 154.5
Clacu01g1814 . 1 235 AS2 family AT4G37540 57.1 8.9e-68 253.8
Clacu05g1330 . 3 113 AS2 family AT4G37540 65.8 8.4e-42 167.5
Clacu06g1588 . 3 113 AS2 family AT4G37540 63.1 4.6e-40 161.8
Clacu05g2466 . 3 126 AS2 family AT4G37540 56.5 1.6e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004254 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47957 PF03195 LOB 5.30E-42 No_clan Clacu TF