Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1830 ATGGTGGGTTCGGTAGGTTTGTGTCAGCCTAGCCTAGTTGCAATGTACAGGGTTTTGCTTCACTCTTCTTCATCAGATCAGCTCTTAAACCAAACCTCAAAAATTTTTAGTTTATCAAAAGGAAAGGAAGAAAAGGGGTTTAAAGCTTTCTTACTTGAAAGGGCAAGGATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCCAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCTGTGAACTCTCTTGCCTATGAGGCTGAGGCCCGAGTTCGGGACCCGGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTCCAAAGGCAAGTTCAAAGGCTCCAAAAGGAACTCGACGCTGCGAATGCTGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAACCTTGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA 723 45.09 MVGSVGLCQPSLVAMYRVLLHSSSSDQLLNQTSKIFSLSKGKEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28860152 28863127 - ClG42_06g0183000.10 Clacu06g1830 252478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1830 240 Pfam Lateral organ boundaries (LOB) domain 66 163 IPR004883 -
Clacu06g1830 240 Coils Coil 145 172 - -
Clacu06g1830 240 ProSiteProfiles LOB domain profile. 65 166 IPR004883 -
Clacu06g1830 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 64 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1830 Clacu-Chr6:28860152 Clacu11g1302 Clacu-Chr11:22050335 8.60E-47 dispersed
Clacu09g0071 Clacu-Chr9:697441 Clacu06g1830 Clacu-Chr6:28860152 1.10E-22 transposed
Clacu01g1388 Clacu-Chr1:25208404 Clacu06g1830 Clacu-Chr6:28860152 1.80E-51 wgd
Clacu10g1381 Clacu-Chr10:26924184 Clacu06g1830 Clacu-Chr6:28860152 3.50E-56 wgd
Clacu06g1830 Clacu-Chr6:28860152 Clacu09g1968 Clacu-Chr9:34538593 1.80E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47957 PF03195 LOB 5.30E-42 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1830 - - - 0.0