Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1838 ATGGGCCTCGAGGCCCAATACAAATGGGCCGTGGGCTTATGGTTCGAATTGGACGAGATCCAAAATTTAGGCCCATTTACACAATCGGGAGATGAGGCTTATCTTGTTGTTTTGAAGAAAAATGAAGAGAAGTTAGAAAAGACTATACAGCTTTTGGAAGAATCTCTAGTGGCTGCATGTGCCACCACTTCATCATATTCTATATTGGTCCCCATGATAAACAGCAAAAGAGAAAGAGAGTTAAGAATGGAAGAAGAGTTTCAAGGGAGAGCAGCAGAGTTGCAACTCCAATACTACAGTGCAAGGATAATGTCCCCGGAAATCGTCGAGATTGGAGACGAAAGTAAGACTATTATTAGTAGCAGAGACGGCGGTGCAACCGATGTCTATGTCGCGGTCGGTAAAGATGATATAGATGTGCTTAAATGGGCCCTTGATCATGTTGTCTCACCTGGTTGTTGTTTATTTCTTGTCCATGTTTTTCCTCCTCTCACCTGTATCACTACACCAGTTGGAAGATTAGCAAGGAGTCAACTAAGCCAAGAACAATTGAGAGTGTATATCAATGAAGAAAACAACAGAAGGAGAAATCTATTGCAAAAATACATCCGCTTATGCACTGATTCCAAGGTGACAGTGGACACATTGCTTTTGGAGAGCAACACAACAGCCAAAGCAATCCTTCAACTAATTCCAGTGCTCAATATCACCAATTTGGTCATAGGGACCAAAAAGCCACTTTCCACAAAGCTACTTGGGAAAAGAATCGCAAAAGGAGAGTATGTGAAAAAGAACGCACCAAAATTTTGTGAGGTTACAATTGTTTATGAAGGCAAGAAAGTGGAAGAGTGTCAACAGGAAATGGGGTTGCTTCCTTCTTCTGAAGATTCCGATTGCCGGCGGCGGCGACGCTCTGGGAAGAACTTGTTCGAGTGGGTCTGCTTGTCGAGCAGGTCGGGTTGCGATTAA 969 43.24 MGLEAQYKWAVGLWFELDEIQNLGPFTQSGDEAYLVVLKKNEEKLEKTIQLLEESLVAACATTSSYSILVPMINSKRERELRMEEEFQGRAAELQLQYYSARIMSPEIVEIGDESKTIISSRDGGATDVYVAVGKDDIDVLKWALDHVVSPGCCLFLVHVFPPLTCITTPVGRLARSQLSQEQLRVYINEENNRRRNLLQKYIRLCTDSKVTVDTLLLESNTTAKAILQLIPVLNITNLVIGTKKPLSTKLLGKRIAKGEYVKKNAPKFCEVTIVYEGKKVEECQQEMGLLPSSEDSDCRRRRRSGKNLFEWVCLSSRSGCD 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28922222 28925736 + ClG42_06g0183800.10 Clacu06g1838 252486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1838 322 Gene3D HUPs 129 267 IPR014729 -
Clacu06g1838 322 Coils Coil 35 55 - -
Clacu06g1838 322 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 136 244 - -
Clacu06g1838 322 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 90 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1838 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0196 Clacu-Chr6:2219823 Clacu06g1838 Clacu-Chr6:28922222 6.20E-114 dispersed
Clacu06g1838 Clacu-Chr6:28922222 Clacu11g0311 Clacu-Chr11:2797434 4.00E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g812 Blo04g00721 Blo16g00236 . . . . . . . . . . . . . . . Bhi02g00511 . . . Hepe09g0232 . . Cla06g01694 Cam06g1882 Cec06g1929 Cco06g1934 Clacu06g1838 Cmu06g1780 Cre06g2595 . . Cone13ag0165 Cone19ag0162 . . . . . . . Bda14g00799 . Bpe15g00651 Bma03g00771 . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00113 Chy02g02612 Cme02g02009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006923 2 2 2 1 2 2 0 2 2 2 2 2 0 1 1 0 2 2 0 2 2 1 1 0 0 1 0 1 0 1 36