Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1845 ATGGAAGCTGGGAGTAGATTCTACTCTGCTACGGATGAGTTCAGATTGGAAGGCAAATGGTTGGTTGACCCCAGGCATCTCTTCGTTGGACCTAGAATTGGAGAGGGAGCTCATGCCAAAGTTTACGAGGGCAAATATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGGGAAACAGCTGATGAGGTTGCAAAGAAAGAGGCTCGGTTTGCTCGAGAAGTTGCAATGCTGTCTAAAGTGCAACATAAGAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACCGAGCTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAACATGCGCCCACGGTGCTTGGACACACGCGTAGCAGTTGGTTTTGCGCTTGATATTGCTCGTGCTATGGAATGTCTTCACTCACATGGCATCATACACCGTGATCTGAAACCTGAGAACCTTCTGTTGACTGCAGATCACAAAACGGTTAAATTAGCTGATTTTGGTTTGGCAAGAGAAGAGTCGTTGACGGAGATGATGACTGCAGAGACGGGGACATACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTGACACTAAGGCAAGGGGAGAAGAAACATTACAACCATAAAGTGGATGCCTATAGCTTTGCTATTGTGTTATGGGAACTGCTACACAACAAGTTGCCATTTGAAGGCATGTCAAATCTTCAAGCAGCATATGCAGCTGCTTTTAAGAATGTTAGGCCTAGCGCAGAGAATATTCCAGAGGAACTGGCTATCATTCTAACATCATGCTGGCAGGAGGATGCAAATGCTCGTCCAAATTTCACCCAAATAATCCAAATGTTACTTAATTACCTTTATACCATTTCACCCCCCGAGCCGATGATACCTTCCCGAATTTTCTCTTCTGAGAACACTGTTTTTCCTCCTGAGTCTCCCGGAACAAGCTCACTGATGGCAGTCCGTGACGATTCAGGGGACACTCCAAAAGCTAAAATGGAAAATAATCCCAGAGGTGGTTTTAGTTATGTAGTATCACAGCCTAAGCCTTACATCATCATGGTAGAATGGAAGATCATCCTGATGCTTGGTTTATCTACTTATATTTATCTGTGCATTTCACTTTCTTCTTCAACTTGGTGCTTTGTGCCTTCAATCTACAAGATTATGTACAGAGCTGTAACTGAATTAGCTGCCTTTATTTAA 1221 43.65 MEAGSRFYSATDEFRLEGKWLVDPRHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETADEVAKKEARFAREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENIPEELAIILTSCWQEDANARPNFTQIIQMLLNYLYTISPPEPMIPSRIFSSENTVFPPESPGTSSLMAVRDDSGDTPKAKMENNPRGGFSYVVSQPKPYIIMVEWKIILMLGLSTYIYLCISLSSSTWCFVPSIYKIMYRAVTELAAFI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28974531 28977368 + ClG42_06g0184500.10 Clacu06g1845 252493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1845 406 Pfam Protein tyrosine and serine/threonine kinase 32 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1845 406 SMART serkin_6 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1845 406 SUPERFAMILY Protein kinase-like (PK-like) 19 316 IPR011009 -
Clacu06g1845 406 FunFam serine/threonine-protein kinase HT1 108 307 - -
Clacu06g1845 406 CDD STKc_MAP3K-like 33 287 - -
Clacu06g1845 406 PANTHER SERINE-THREONINE PROTEIN KINASE 25 288 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu06g1845 406 ProSiteProfiles Protein kinase domain profile. 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1845 406 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524(InterPro)
Clacu06g1845 406 PRINTS Tyrosine kinase catalytic domain signature 215 237 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1845 406 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1845 406 PRINTS Tyrosine kinase catalytic domain signature 103 116 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1845 406 PRINTS Tyrosine kinase catalytic domain signature 141 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1845 406 MobiDBLite consensus disorder prediction 316 338 - -
Clacu06g1845 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1845 406 Gene3D Transferase(Phosphotransferase) domain 1 108 296 - -
Clacu06g1845 406 FunFam Kinase suppressor of Ras 1 16 106 - -
Clacu06g1845 406 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1845 Clacu-Chr6:28974531 Clacu11g1310 Clacu-Chr11:22301673 1.20E-61 dispersed
Clacu01g1999 Clacu-Chr1:31926481 Clacu06g1845 Clacu-Chr6:28974531 3.90E-84 transposed
Clacu10g2232 Clacu-Chr10:35290419 Clacu06g1845 Clacu-Chr6:28974531 4.20E-116 transposed
Clacu10g1370 Clacu-Chr10:26782601 Clacu06g1845 Clacu-Chr6:28974531 3.00E-157 wgd
Clacu06g1845 Clacu-Chr6:28974531 Clacu09g1974 Clacu-Chr9:34605951 3.30E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73672 PF07714 PK_Tyr_Ser-Thr 4.90E-58 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1845 - - - 0.0