Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1848 ATGGCGGCCATTTCCTTAGCTTCCGTTTCCACTTCCTCTAAACTCGTTTTCCCTCACCCGTCTCCTTCTCCTTCTCCTTCTTCCTCCCCTTCTTCTTCCCTTTTATCCAAACTTTCTTCCTCTTTCTTGAACCCTTCTTCTATTCGCCCCCTCTCTGTTTCCTCCCCCTCTCTAAACCGTCCTCGTTCCTTCACAATTCGAGCCGCCCGTGGGAAATTCGAGAGGAAGAAACCCCATGTCAATATCGGCACAATTGGGCATGTCGACCATGGTAAAACCACTCTCACTGCCGCTTTGACTATGGCTTTGAGCAAAGCCCCAAAGAAATACGACGAAATTGACGCCGCCCCTGAAGAACGAGCTCGTGGTATTACAATTAATACGGCTACTGTCGAGTACGAGACGGAGAGCCGTCATTACGCTCATGTCGATTGCCCTGGCCATGCTGATTATGTCAAGAATATGATTACTGGTGCTGCTCAAATGGATGGAGCAATTTTGGTGGTTTCCGGTGCTGATGGCCCAATGCCACAAACGAAGGAGCATATTTTGTTGGCTAAGCAAGTGGGTGTTCCTAATATGGTGGTGTTTCTCAACAAGAAGGATCAAGTTGATGATGAGGAGCTTCTGCAGCTTGTGGAATTGGAGATGCGTGAGTTGCTTTCGTCTTATGAATTCCCAGGTGATGATGTTCCAATTATTGCTGGTTCTGCTTTGTTAGCTTTGGAAGCTTTAATGGCTAATAATAATATTGCTAGAGGAGAAAATGAATGGGTTGATAAGATTTTTGAACTTATGGATGCTGTTGATAGTTACATACCAATACCTGAAAGACAAACAGATCTTCCATTTTTGCTTGCTGTTGAAGATGTGTTTTCTATTACTGGTCGTGGTACTGTGGCTACAGGGCGTGTTGAAAGAGGCACTATTAGAGTGGGAGAGACAGTGGATATTGTGGGATTGAGGGAAACTAGAAACACAACAGTAACAGGAGTGGAAATGTTTCAGAAAATTCTTGATGAGGCTTTGGCTGGGGATAATGTTGGGTTGTTGCTTAGAGGTGTTCAGAAGGCTGATATTCAAAGAGGGATGGTTTTAGCCAAGCCTGGCACTATCACTCCACATACCAAGTTTAGTGCAGTTGTGTATGTGTTGAAGAAGGAAGAGGGTGGTAGACATTCACCCTTTTTTGCCGGTTACAGACCGCAATTCTACATGAGGACAACCGATGTTACCGGTAAGGTGTCTTCGATTATGAATGACAAGGATGAGGAGTCGAAAATGGTTATGCCAGGAGACCGAGTGAAAATGGTTGTGGAACTGATTATGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATCAGAGAAGGTGGAAAGACTGTTGGTGCTGGTGTGATTCAATCAATAATCGAGTGA 1419 44.89 MAAISLASVSTSSKLVFPHPSPSPSPSSSPSSSLLSKLSSSFLNPSSIRPLSVSSPSLNRPRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALSKAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKKDQVDDEELLQLVELEMRELLSSYEFPGDDVPIIAGSALLALEALMANNNIARGENEWVDKIFELMDAVDSYIPIPERQTDLPFLLAVEDVFSITGRGTVATGRVERGTIRVGETVDIVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFSAVVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28992074 28993492 - ClG42_06g0184800.10 Clacu06g1848 252496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1848 472 CDD EFTU_III 373 467 - -
Clacu06g1848 472 PRINTS GTP-binding elongation factor signature 81 94 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu06g1848 472 PRINTS GTP-binding elongation factor signature 121 129 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu06g1848 472 PRINTS GTP-binding elongation factor signature 194 203 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu06g1848 472 PRINTS GTP-binding elongation factor signature 141 151 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu06g1848 472 PRINTS GTP-binding elongation factor signature 157 168 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu06g1848 472 Gene3D Translation factors 411 471 - -
Clacu06g1848 472 MobiDBLite consensus disorder prediction 1 36 - -
Clacu06g1848 472 Pfam Elongation factor Tu domain 2 298 367 IPR004161 GO:0005525(InterPro)
Clacu06g1848 472 Gene3D - 69 276 IPR027417 -
Clacu06g1848 472 CDD EF_Tu 78 276 IPR041709 -
Clacu06g1848 472 Gene3D Translation factors 279 407 - -
Clacu06g1848 472 FunFam Elongation factor Tu 411 471 - -
Clacu06g1848 472 FunFam Elongation factor Tu 68 276 - -
Clacu06g1848 472 Pfam Elongation factor Tu GTP binding domain 77 274 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu06g1848 472 CDD EFTU_II 284 370 IPR033720 -
Clacu06g1848 472 SUPERFAMILY Translation proteins 278 374 IPR009000 -
Clacu06g1848 472 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 77 277 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu06g1848 472 FunFam Elongation factor Tu 279 407 - -
Clacu06g1848 472 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 114 129 IPR031157 -
Clacu06g1848 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 292 IPR027417 -
Clacu06g1848 472 Pfam Elongation factor Tu C-terminal domain 371 470 IPR004160 -
Clacu06g1848 472 PANTHER ELONGATION FACTOR TU-RELATED 66 471 IPR050055 GO:0003746(PANTHER)|GO:0005739(PANTHER)|GO:0006414(PANTHER)|GO:0070125(PANTHER)
Clacu06g1848 472 NCBIfam elongation factor Tu 69 472 IPR004541 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Clacu06g1848 472 Hamap Elongation factor Tu [tuf]. 68 472 IPR004541 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Clacu06g1848 472 MobiDBLite consensus disorder prediction 1 18 - -
Clacu06g1848 472 NCBIfam small GTP-binding protein domain 80 208 IPR005225 GO:0005525(InterPro)
Clacu06g1848 472 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 371 471 IPR009001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1848 K02358 - - csv:101202988 833.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1848 Clacu-Chr6:28992074 Clacu09g0666 Clacu-Chr9:5789924 5.80E-148 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g834 Blo04g00717 . . . . . Bma06g00224 . . . Cma10g00090 Cma11g00064 Car10g00079 Car11g00058 Sed08g0074 . Cpe04g01586 Bhi02g00598 Tan09g2310 Cmetu02g0003 . . . . Cla06g01704 Cam06g1892 Cec06g1941 Cco06g1945 Clacu06g1848 Cmu06g1789 Cre06g2604 Cone2ag0932 Cone16ag0071 . . . . . . . . . . . Bpe15g00654 Bma03g00766 . . Cmo10g00093 Cmo11g00067 . . . . . Cpe18g00872 . . . . . . . . . . . . . . Lsi06g01592 . . Cme02g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006341 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 38