Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1851 ATGGCAATCCGAATTATTTTGGCTGCGCAGGAATCTTCCTGGAAATTAACCATCGCCAAGAAATGTGGATGTAACTTTAATGCAGCTCTTGGGTTCGACTTTGTTTGTATCGTTTCTTCAGAATGTACTCGCTCTCGAGTGAAATTTTTAACCCTTTTTAGTTCTTGTGAAGTGATGGGTGGGAAAAGTTCTAAGCATGGAAGTTCAAGGCGGATTTCGTCGAGTCGGTCGAACTCGCAGCAGCGGAGTCATTACGGTTATCCACAGTCACCATATGCTCAATCAAGAAGCACGCCGCAGTATCGGTATGCACCTTCAACTCCTAGCTATGGTGGAACTCAAGCCCCTGAGACAAGAAAGAGGCTGGAGAGGAAGTATTCAAGGATAGATGATAACTATAATAGTCTAGAGCAGGTTACTGAGGCATTGGCTCGTGCTGGCCTGGAGTCCTCGAATCTTATCGTTGGTATAGATTTCACGAAGAGCAATGAGTGGACAGGTGCAAGATCATTTAACCGTAGAAGTTTGCATCACATTGGAGATGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGACAAACATTATCTTCCTTCGATGAGGATAATTTGATTCCTTGCTTTGGTTTTGGAGATGCATCAACTCATGACCAAGAGGTTTTCAGCTTTTATCCCGACGAGCGATTTTGTAATGGATTTGAAGAAGTGTTGGGTAGATATAGGGAACTGGTGCCTCATCTTCGACTTGCAGGACCAACATCATTTGCCCCGATCATCGAAATGGCTATCACAATTGTCGAGCAAAGTGGCGGCCAATACCATGTATTGGTAATAATAGCTGATGGTCAGGTTACAAGAAGTGTCGATACTGAGCGTGGACAGTTTAGCCCACAGGAAAAGAAAACCATTGAAGCAATTGTGAAAGCTAGTGAATACCCCTTGTCGATTATACTAGTTGGAGTAGGAGATGGACCTTGGGACATGATGAGGGAATTTGATGACAACATCCCAGCTCGAGCATTTGATAACTTCCAATTTGTAAATTTCACAAATATAATGTTGAAGAATATGGATCGATCCAGAAAGGAAACGGAATTTGCTCTTGCAGCACTCATGGAAATACCCTCCCAGTATAAAGCTACACTGGAGCTTGATATTTTGGGTGCCAGTAGAGGGAAGGCAATCGACCGGATTCCTCTTCCCCCTCCTCGTTATGGACCTAGCACCCAGAAAACCTCAAACTCAAGCAGTTCTCGCCCAATGGCGCCCTCATTTGGTGGAGCTGCTCCTGCCCGAACTGCACCTCCTCTTAGTTCGGTTTCTGATGCTCATGCTTGTCCAATTTGCATCTCCAATGCAAAGGATATGGCTTTTGGTTGCGGACATCAGACATGCTGTGAATGTGGACAGGATCTTCAGCAGTGCCCCATATGCCGCAGCTTCATTGACACTAGGATAAAGCTTTATTAG 1473 44.53 MAIRIILAAQESSWKLTIAKKCGCNFNAALGFDFVCIVSSECTRSRVKFLTLFSSCEVMGGKSSKHGSSRRISSSRSNSQQRSHYGYPQSPYAQSRSTPQYRYAPSTPSYGGTQAPETRKRLERKYSRIDDNYNSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVLGRYRELVPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSPQEKKTIEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTNIMLKNMDRSRKETEFALAALMEIPSQYKATLELDILGASRGKAIDRIPLPPPRYGPSTQKTSNSSSSRPMAPSFGGAAPARTAPPLSSVSDAHACPICISNAKDMAFGCGHQTCCECGQDLQQCPICRSFIDTRIKLY 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29015716 29019285 + ClG42_06g0185100.10 Clacu06g1851 252499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1851 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 490 IPR013083 -
Clacu06g1851 490 MobiDBLite consensus disorder prediction 396 434 - -
Clacu06g1851 490 Coils Coil 119 139 - -
Clacu06g1851 490 SUPERFAMILY vWA-like 152 334 IPR036465 -
Clacu06g1851 490 ProSiteProfiles Zinc finger RING-type profile. 447 480 IPR001841 -
Clacu06g1851 490 Pfam Zinc finger, C3HC4 type (RING finger) 445 485 - -
Clacu06g1851 490 PANTHER COPINE FAMILY PROTEIN 1 47 490 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
Clacu06g1851 490 MobiDBLite consensus disorder prediction 408 423 - -
Clacu06g1851 490 SMART VWA_4 150 353 IPR002035 -
Clacu06g1851 490 MobiDBLite consensus disorder prediction 59 114 - -
Clacu06g1851 490 Pfam Copine 175 388 IPR010734 -
Clacu06g1851 490 SUPERFAMILY RING/U-box 444 485 - -
Clacu06g1851 490 MobiDBLite consensus disorder prediction 59 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1851 K16280 - - csv:101221610 788.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1927 Clacu-Chr2:32818153 Clacu06g1851 Clacu-Chr6:29015716 2.70E-18 dispersed
Clacu06g1851 Clacu-Chr6:29015716 Clacu11g1313 Clacu-Chr11:22371896 2.40E-19 dispersed
Clacu01g1585 Clacu-Chr1:27925898 Clacu06g1851 Clacu-Chr6:29015716 4.70E-121 transposed
Clacu01g2182 Clacu-Chr1:33242063 Clacu06g1851 Clacu-Chr6:29015716 5.40E-121 transposed
Clacu10g1363 Clacu-Chr10:26719949 Clacu06g1851 Clacu-Chr6:29015716 1.70E-155 wgd
Clacu05g2804 Clacu-Chr5:35368005 Clacu06g1851 Clacu-Chr6:29015716 1.30E-162 wgd
Clacu06g1851 Clacu-Chr6:29015716 Clacu09g1982 Clacu-Chr9:34677740 7.40E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136