Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1858 ATGGCAATGGCACACGAAACGACGCCGCTTAGGGTAGCCACTCTCACAACCTCAAACACCACTTGCCTGGCCGCCCATAACGGCCTCCTCTACTCCGGCTCCGCCAACCAAATCGCCGTCTTCGATTTAACCAACGACTTCACCCAAATCGACACTCTTCGCATAAACGACGCCGCTTCGGGGTCCGTTAAGTCCATCGCTTTTGGGCCTTGGAAAATCTTCACGGCCCATCAGGATTGCAAGATCCGCGTATGGAAAATCACGCGCTCGGAACCGCCACGTCATCATCTTCTGGCAACTCTCCCCACCGTTAAAGACCGGCTTTACCGGTTTATTTCGCCGGGGAATTACGTACGTGTACGGCGCCATCACAAGCGGCTGTGGATTGAGCATTGGGATGCGGTTTCTGGGGTGGTGGTGAATGGAGGGTTTGTGTACTCTGTTTCATGGGATCGGAGTTTTAAGGTTTGGAGTGCTTCGGATCATAAGTGTTTGTTGTCCGTCAAAGCTCATGACGATGCGGTCAACGCGGTTGCTGTAGGTCAGAACGGCGTCGTTTATACCGGCTCTGCGGATGGGGTTATTGGAGTTTGGGAGATTGGGGAGGGGAAGAAGAAGAAGTATACGTTGGTTGGGACTTTGGACAACCACAAATCCACGGTAAACGCGATCGCGTTGAACGAGGGAGGTTGGGCAATGTTTTCGGGGAGCAGTGACCGTTCAATAATGGTGTGGAAAAAGGAAGAGGCCGGAAAGCAAATTGCGTTTGTTGAGGCTTTATCAGGTCATCAAGGGGCTGTTTTGTCCTTGTATACTCTTCGAGATTTCTTAGTCAGTGGCTCTGAAGATCGAATGCTCAGGATTTGGAGAGGCGACATCACTAACGGCTACCATTGTACGGCTGTGATGGATGGACACAGGTCGCCGGTGAAGTCTTTGGTTGCCGTCGGAGTCGGTGAACGAAGTTTGATGATCTGTAGTGCCAGTTTGGATGGAGAAATACAACTAGTTTCGCTCACGCTCACCATGGAAGAGAGCGCATTTCATCCTGATCTGATTCACGCCATCTTCAAGCTCGAGTGGAGCAGAAGATCACTTGAGCGCGAGAAAAACGAGAATCCGGATGCTATGGATTGTGAGGTTGACGCTGGAACATCCAAGAAGAGCAGGCCAATGTCAGCCAATGCAAATGCTCTTAAATTGAGCTCTAAACTTGTACAAATTTTTATTTCAGAGGCTGTGCAGCGTGCTGCAACAATTGCTGAAGCAGAAGTCTATAGAATGCAGCTTGGTGTTGGTGTGAATAAATTTCTCAATGAAAGAACTTCCTATCCGTTAAAAAATATCTATGAAGCTTGGTCTTGGTGCTGTCAAGTTGTAATGACTTCTGTAAGAGATTCCTCCAAAGCCGTGTTCCTCATCTTTCCTCGACCTTGTTATTTCATTTCCAACATCGACGGTGAAGTTTTGCCTTAG 1476 48.98 MAMAHETTPLRVATLTTSNTTCLAAHNGLLYSGSANQIAVFDLTNDFTQIDTLRINDAASGSVKSIAFGPWKIFTAHQDCKIRVWKITRSEPPRHHLLATLPTVKDRLYRFISPGNYVRVRRHHKRLWIEHWDAVSGVVVNGGFVYSVSWDRSFKVWSASDHKCLLSVKAHDDAVNAVAVGQNGVVYTGSADGVIGVWEIGEGKKKKYTLVGTLDNHKSTVNAIALNEGGWAMFSGSSDRSIMVWKKEEAGKQIAFVEALSGHQGAVLSLYTLRDFLVSGSEDRMLRIWRGDITNGYHCTAVMDGHRSPVKSLVAVGVGERSLMICSASLDGEIQLVSLTLTMEESAFHPDLIHAIFKLEWSRRSLEREKNENPDAMDCEVDAGTSKKSRPMSANANALKLSSKLVQIFISEAVQRAATIAEAEVYRMQLGVGVNKFLNERTSYPLKNIYEAWSWCCQVVMTSVRDSSKAVFLIFPRPCYFISNIDGEVLP 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29052542 29058002 - ClG42_06g0185800.10 Clacu06g1858 252506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1858 491 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 200 - -
Clacu06g1858 491 SMART WD40_4 296 338 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 SMART WD40_4 253 290 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 SMART WD40_4 207 246 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 SMART WD40_4 8 42 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 SMART WD40_4 161 199 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 SMART WD40_4 114 158 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 SMART WD40_4 46 86 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 SUPERFAMILY WD40 repeat-like 15 339 IPR036322 GO:0005515(InterPro)
Clacu06g1858 491 Gene3D - 117 371 IPR015943 GO:0005515(InterPro)
Clacu06g1858 491 Gene3D - 4 111 IPR015943 GO:0005515(InterPro)
Clacu06g1858 491 FunFam BnaA09g28200D protein 118 202 - -
Clacu06g1858 491 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 246 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 Pfam WD domain, G-beta repeat 163 198 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 Pfam WD domain, G-beta repeat 209 245 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 Pfam WD domain, G-beta repeat 258 289 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 MobiDBLite consensus disorder prediction 370 385 - -
Clacu06g1858 491 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 208 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 246 - -
Clacu06g1858 491 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 338 IPR045182 -
Clacu06g1858 491 ProSitePatterns Trp-Asp (WD) repeats signature. 186 200 IPR019775 -
Clacu06g1858 491 MobiDBLite consensus disorder prediction 370 389 - -
Clacu06g1858 491 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 289 IPR001680 GO:0005515(InterPro)
Clacu06g1858 491 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1858 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1484 Clacu-Chr1:26934159 Clacu06g1858 Clacu-Chr6:29052542 2.60E-45 dispersed
Clacu06g1858 Clacu-Chr6:29052542 Clacu07g1321 Clacu-Chr7:27989540 3.90E-22 dispersed
Clacu01g0756 Clacu-Chr1:8196427 Clacu06g1858 Clacu-Chr6:29052542 2.60E-46 transposed
Clacu05g2808 Clacu-Chr5:35402684 Clacu06g1858 Clacu-Chr6:29052542 7.10E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g870 . . . . . . . . . . Cma10g00081 . Car10g00072 . . . . Bhi02g00578 . . . Hepe09g0083 . . Cla06g01713 Cam06g1902 Cec06g1952 Cco06g1955 Clacu06g1858 Cmu06g1800 Cre06g2614 . . . . . . . . . . . . Bpe07g00866 . . . . Cmo10g00082 . . . . . . . . . . . . . . . . . . . . . Lsi06g01608 Csa01g00090 . Cme02g02030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49