Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1868 ATGGGGAAGAAGACGAAGAAACCCGGAAAGGGAAAAGAGAAGACTGAGAAGAAAACGGCCAAAGCCGAGGAAAAGAGAGCTCGCAGGGAGAGCAAGAAGCTCTCTCCTGAGGATGATATTGATGCAATTCTCTTGAGTATACAAAAGGAGGAAGCGAAGAAAAAGGAAGTTCATGTTGAGGAGAATGTCCCTGCGCCATCTCCTCGGTCCAATTGTTCGTTGACTATCAATCCCTTGAAAGAAACAGAGTTGATCCTTTATGGGGGTGAATTTTACAATGGTACCAAGACATATGTCTATGGTGATCTGTATCGATACGATGTTGAGAAACTAGAGTGGAAAGTAATTTCAAGTCCCAATAGCCCCCCTCCTCGTAGTGCTCATCAAGCTGTTGCTTGGAAGAATTACCTCTATATTTTTGGTGGAGAGTTTACATCTCCTAACCAAGAGAGGTTTCATCACTACAAGGATTTCTGGGTGCTGGACCTGAAAACAAATCAATGGGAACAAATAAATTTGAAAGGTTGTCCTAGTCCACGCTCTGGTCATCGGATGGTCTTGTACAAGCACAAAATTATTGTTTTTGGTGGGTTCTATGACACTTTAAGGGAAGTGAGATACTATAACGACATGTACGTGTTTGATCTGGATCAGTACAAGTGGCAAGAAGTAAAGCCTAGTCCTGGTGCAATGTGGCCTAGTCCTCGAAGTGGTTTCCAATTTTTTGTTCAGCAAGATGAGGTTTTCTTGTATGGTGGCTATTTTAAAGAAATTCAATCTGATAAGAACACTTCTGAAAGAGGAGTTGTGCATGCAGACATGTGGTCCCTTGATCCGAGGACTTGGCAATGGAATAAGGTAAAGAAAGGTGGGATGCCGCCTGGGCCTCGTGCAGGGTTCTCCATGTGTGTTCATAAGAGGCGAGCCTTGCTATTTGGGGGAGTGGTGGACATGGAAGTTGAAGGCAAGTATCCTCTAGAGTTAAGGAAGGAGAAGTCGACAAAGGCAAAGATTAAAAAAATTTCTGAGCAAAAGAACAATGAGGTTGCGTTTGATGATAATATAAATGAGGAGGTTGTTGACATTGGTAAAATTGAAAATCCAGTCATGGAAGAAGCATGCAACATGGAAACTGACATTGATGAAATATCTCATCATATATCTTCATCTGTGTCCATTAACAACGGTGGATTGGAAATGAGTTCTGGCAACAAACAACAAGAATCTGGTTCGAACAAAAATGCTGTTTTGCCAGAGGTGATTAAGCCCTGTGGACGTATTAACTCCTGCATGGTTGTTGGAAGAGATACACTGTACATCTATGGGGGTATGATGGAGATTAAAGATCGAGAAATCACCCTTGATGACTTGTATGCTCTCAATCTCAGTAAACTTGATGAATGGAAGTGCATTATACCGGCCACGGAATCTGAATGGGTAGAAGCCTCGGAGGATGAAGATGAGGAAGATGATGAAGATGACAGTGAGAATGATGACAATTCTGAAGGAAGCAATGGAAGTGATGAGGATGATAGTGATGAGGAGGATTTTGAGGCTGGAAATGATGGATCACGAAAAGTAGGAGATGCTGTAGCTTTAATTAAGGGTGAGGGCAGGAATCTCCGTAGGAAAGAGAAGCGGGCGAGGATCGAACAAATCAGAGCTAACCTTGGGCTTTCAGATTCACAAAGAACTCCCATGCCTGGAGAATCTCTAAGGGAGTTCTATAAACGTACAAATCTATATTGGCAAATGGCGGCACATGAGCATACACAACATACTGGAAAGGAACTTCGCAAGGACGGATTCGATCTTGCTGAATCTCGTTACAGGGAGCTTAAACCTATCCTTGATGAGCTTGCCATATTGGAGGCAGAGCAGAAAGCAGAAGAAGCAGAAGCTCCTGAAACTAGTTCAAGAAAAAGAGGCAAGAAGAAAAATAAAATTCGAATCTCCAAAACCCCAATCGGGTCACAGCGGCTCGTAGCCGGGTCCCGCAACTCGCAAATTACCAGAGCAATGAAGAAGAAAGCAACAGCAGGAACCATAATTCTTCTTTCACTTTTACTTTCTCTACAAGATGTTGTTCATCTTGCTTTCGCTCTATCTCCTTTAGACAGCAATCAGGACGTGGAGCAATCTGCAACTTCAAGACCTCTTGAGCAAGACAAAGAGCATGTTGATGAAGTTCATTGTTCCAGAGAAAGAAGTAGGGCAGCCTGGAATATCATTGAGGAGCATTTGCTGCCGTTTATGGAGAAAGAAAATTATCAGGTTTCAACCAAGTGTAGGCTTCATCCAAACAACGATCTCTTCAGAGATCAGGAACAGCACAAGATTCATCTTGATATAAATCATTGGCAGTGTGGATACTGTCGTAAAAGCTTTCGTGCTGAAAAATTTCTTGATAAGCATTTTGACAACAGACATAACAATCTTCTGAATGTTAGCTACGGGAAGTGCTTGGCTGATTTATGTGGGGCATTACATTGTGACCTAAAGATGGATATCAAGTCACGTAAATCTAAATGCAATCCTGCAGCTGCTGCTAGGAACAAGCATTTATGTGAGAGTCTTGCCGATAGCTGTTTTCCAATTAATGAGGGACCATCAGCAAACCGTCTTCATGAGTTGTTTCTTCACCAATTCTGTGGAGCTCATTCTTGCACTGGGAAACAAAAGCCATTTTCTAGAGGAGCGGCGAGGCAACCCGGCATCTTCTACATGGCATCTTCAATACTGATTTTGATGCTGCTGCCAATTTTCTATGTCATTGTCTACTTACACCGTAGAGAATCGAGGAACGGAATCGAAGTGCTTAGACGAATCTCAAAAGCTGGACGTAAATCCAAACCCTTGATTGCATGGCTTTTCATCCACGGTTGTCTCATCGAGCTTGCTGGTTTAGTCATACTTTGCCGCAACTCCCATGAAGAGCAATCCTTTCTATGGATTAATCGGCAAGATTCTCATTGCCAGATGCATGATTAG 2991 42.69 MGKKTKKPGKGKEKTEKKTAKAEEKRARRESKKLSPEDDIDAILLSIQKEEAKKKEVHVEENVPAPSPRSNCSLTINPLKETELILYGGEFYNGTKTYVYGDLYRYDVEKLEWKVISSPNSPPPRSAHQAVAWKNYLYIFGGEFTSPNQERFHHYKDFWVLDLKTNQWEQINLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDMYVFDLDQYKWQEVKPSPGAMWPSPRSGFQFFVQQDEVFLYGGYFKEIQSDKNTSERGVVHADMWSLDPRTWQWNKVKKGGMPPGPRAGFSMCVHKRRALLFGGVVDMEVEGKYPLELRKEKSTKAKIKKISEQKNNEVAFDDNINEEVVDIGKIENPVMEEACNMETDIDEISHHISSSVSINNGGLEMSSGNKQQESGSNKNAVLPEVIKPCGRINSCMVVGRDTLYIYGGMMEIKDREITLDDLYALNLSKLDEWKCIIPATESEWVEASEDEDEEDDEDDSENDDNSEGSNGSDEDDSDEEDFEAGNDGSRKVGDAVALIKGEGRNLRRKEKRARIEQIRANLGLSDSQRTPMPGESLREFYKRTNLYWQMAAHEHTQHTGKELRKDGFDLAESRYRELKPILDELAILEAEQKAEEAEAPETSSRKRGKKKNKIRISKTPIGSQRLVAGSRNSQITRAMKKKATAGTIILLSLLLSLQDVVHLAFALSPLDSNQDVEQSATSRPLEQDKEHVDEVHCSRERSRAAWNIIEEHLLPFMEKENYQVSTKCRLHPNNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHNNLLNVSYGKCLADLCGALHCDLKMDIKSRKSKCNPAAAARNKHLCESLADSCFPINEGPSANRLHELFLHQFCGAHSCTGKQKPFSRGAARQPGIFYMASSILILMLLPIFYVIVYLHRRESRNGIEVLRRISKAGRKSKPLIAWLFIHGCLIELAGLVILCRNSHEEQSFLWINRQDSHCQMHD 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29102570 29119081 - ClG42_06g0186800.10 Clacu06g1868 252516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1868 996 Gene3D - 45 355 IPR015915 GO:0005515(InterPro)
Clacu06g1868 996 MobiDBLite consensus disorder prediction 479 518 - -
Clacu06g1868 996 Pfam Kelch motif 423 463 - -
Clacu06g1868 996 Pfam Domain of unknown function (DUF4110) 558 642 IPR025183 -
Clacu06g1868 996 MobiDBLite consensus disorder prediction 476 530 - -
Clacu06g1868 996 MobiDBLite consensus disorder prediction 12 37 - -
Clacu06g1868 996 Pfam Galactose oxidase, central domain 246 305 - -
Clacu06g1868 996 Pfam Galactose oxidase, central domain 134 188 - -
Clacu06g1868 996 Pfam Galactose oxidase, central domain 190 239 - -
Clacu06g1868 996 PANTHER KELCH DOMAIN-CONTAINING PROTEIN 1 642 IPR052588 -
Clacu06g1868 996 MobiDBLite consensus disorder prediction 1 37 - -
Clacu06g1868 996 SUPERFAMILY Kelch motif 82 470 IPR015915 GO:0005515(InterPro)
Clacu06g1868 996 Coils Coil 12 32 - -
Clacu06g1868 996 Pfam Galactose oxidase, central domain 68 122 - -
Clacu06g1868 996 MobiDBLite consensus disorder prediction 628 651 - -
Clacu06g1868 996 ProSitePatterns Zinc finger C2H2 type domain signature. 789 810 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1470 Clacu-Chr5:17696200 Clacu06g1868 Clacu-Chr6:29102570 2.10E-93 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1868 - - - 0.0