Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1874 ATGCCAAGTTCTGTTCAGCACATAACTTTTTGCTGCCGTAAGAAGTCAAATAGACACGTGGTCGACGTCCCCATCAAACTTTCCTCACTCGCGGGGTTTTCGTCTTTACGGGGGTTGGTTCGCATTGCGAGCGACGGGCTCTGCTCGAGATCCAGGGTTTCGTTTCGAGGGGTTTATCTTGTTCTTGGATTAGATTCTGCCTTTGCTGTATTTCGATTTTTCTCTCCTTCTCGTGTTTTTCTTTCGTTTTCTTTTTGCTTCTCCCAAAGGCGGGAGCGGAAGGATGAAATAGTGAATTTGTTCCACGAGCTTGAGATTCCCACAAATGGCAACCCTTGCGTTCACTGGTCGACGACAGAAGGACTCCGTTGTCCGGATAAATTGCTGGGAATTAATCCTATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGAAAGTATTCACTTTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCGGATTACCGACATGCCGTGGAAACAGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGAATGGATACTGGAATCTCTACTCTTGATGATTCACGGGCCATTAAGAGGAAACGTATTAGTATGAATGCAGATGGTTTCGATTGTTTTGGTGCTCCTCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGATAAGGTTAAAGTTAGAACTTGAACAGGTCCGACTGCTGCAAAAAAAAGCTTCTAATGTTAGCTCAATTTTTGCCGTCTCTTCATCTAGTAATATCCAGAGTTCTAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTTTAATAGGTTGTCTGAGGTATCAGTTCCTCCTGCTAAAAAGCCACTGCCCTCTGGGCGCAATGGGCCTTCTGCTAAAAGAAGCTCATCTGGGCGGTTTGAGTCTGCTAAACCAGCTGCTGTATCTGCTTCCTCGACAGCGTCATTGAAACAATGTGAACAGCTGCTGCAACGCTTGATGTCACATACGTTTGGTTGGGTTTTTAACACTCCAGTGGATGTGGTCAAGTTGAATATTCCAGATTATTTTACTGTCATAAAGCATCCTATGGATCTGGGCACTGTAAAGTCTAAGATAACTGCAGGAGAATATACACATCCGTTGGATTTTGCTGCTGATGTTCGACTTACTTTTTCAAACGCGATGACTTACAACCCTCCCGGGAATGACGTCCATACCATGGCTAAGACACTAAGTAAATTTTTTGAAGTTAGATGGAAAACTATAGAGAAGAAGCTCCCTGTGACAAGTGAAGAACAACGCCAAGTACCTTCAGCCACATTTGTTCCTAAGGAAACTGAAAGTACTCTGCCAGTGCCACCTTCAAAAAAGACAAAAATCCCTACAAATGACCCTGATGTTCAGCCAACTAGTGTGGTAAGAATCATGACCGAGCAGGAGAAGCATAAACTAAGTGTAGAGTTGGAGGCTTTGCTGGGAGAGTTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGCTGGCGAGGATGAGATTGAAATTGACATTGATGCTCTTAGTGATGATACCTTGTTTGCATTGAGGAAGCTATTAGACGATTATATGATGGAAAAGCAGAAACGCACAAAGGCTGAACCATGTGTAGTGGAGCTTCATAACGAATCAGGATTTAGCAATTCATCAATGCCACCCAGTAAAGGAAATGATCCCATTGATGAGGATGTAGACATTGTTGGTGGGAATGACCCCCCTGTTTCAAGCTATCCTCCAATAGAGATAGAAAAAGATGCAGTTCGTAGGGATAGTAAATGCAGTAATTCCAGTAGCTCGAGTAGTGAATCAGGTTCTTCATCTAGTGATTCTGGCTCAGAAAGCTTGTCGGGAAGTGAATCTAATGCTGCTAAAGCTTTAGATAGTAATGTGGCTCCAAAGGAAATTTTGTGTTCTGAAACAAATGTGGATCGGAAGCAAAATGAACTTGGTGATTTAGAAATTGGAAATTATGAAGAAAATGGGATTGATCTAGTTGAGCAAACCACCCAGGCCAATACAAACACTATCGAGTCAGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTATTAAGGAACCGTTTTGCTGACACAATACTGAAAGCTCGAGAGAAGGCACTTGAAAAGGGTGACAAACGGGATCCTGAAAAAGTGCGAATGGAAAGGGAGGAACTTGAAAGACAACAAAGAGAAGAAAAAGCCCGGTTGCAAGCAGAGGCAAAAGCTGCAGAGGATGCTCGCAGGAAGGCTGAAGCTGAAGCTGCGGCCGAAGCTAAGAAGAAAAGAGAGTTGGATAGAGAAGCTGCACGTCAGGCCTTACTTAAGATGGAGAAGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTGGAGATGCTTAGGGCTTCCAACGATGAGCACCTACCGAACTTCACAGAGGAGTCAAGCCCAGAACATTCTCAAAATGGATTTGGCAGTTTCAAGCTTCAAGGTAGTAACCCCTTAGAACAGCTTGGTTTGTACATGAAGATGGACGAGGAAGATGAAGAGGAAGAAAGTGAACCACCCCAAAGTGTTAATAAGCCAGCAAACGATGTTGAAGAAGGGGAAATCGATTAG 2742 43.95 MPSSVQHITFCCRKKSNRHVVDVPIKLSSLAGFSSLRGLVRIASDGLCSRSRVSFRGVYLVLGLDSAFAVFRFFSPSRVFLSFSFCFSQRRERKDEIVNLFHELEIPTNGNPCVHWSTTEGLRCPDKLLGINPMAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRISMNADGFDCFGAPLQVFSLSTLSRSERKDLEIRLKLELEQVRLLQKKASNVSSIFAVSSSSNIQSSSDQHRGAPPETFNRLSEVSVPPAKKPLPSGRNGPSAKRSSSGRFESAKPAAVSASSTASLKQCEQLLQRLMSHTFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYTHPLDFAADVRLTFSNAMTYNPPGNDVHTMAKTLSKFFEVRWKTIEKKLPVTSEEQRQVPSATFVPKETESTLPVPPSKKTKIPTNDPDVQPTSVVRIMTEQEKHKLSVELEALLGELPESIIDFLKEHSSNSQAGEDEIEIDIDALSDDTLFALRKLLDDYMMEKQKRTKAEPCVVELHNESGFSNSSMPPSKGNDPIDEDVDIVGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESGSSSSDSGSESLSGSESNAAKALDSNVAPKEILCSETNVDRKQNELGDLEIGNYEENGIDLVEQTTQANTNTIESDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQQREEKARLQAEAKAAEDARRKAEAEAAAEAKKKRELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDEHLPNFTEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKMDEEDEEEESEPPQSVNKPANDVEEGEID 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29182980 29189934 - ClG42_06g0187400.10 Clacu06g1874 252522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1874 913 FunFam Transcription factor GTE4 313 448 - -
Clacu06g1874 913 MobiDBLite consensus disorder prediction 447 484 - -
Clacu06g1874 913 Coils Coil 239 259 - -
Clacu06g1874 913 Gene3D - 319 454 IPR036427 GO:0005515(InterPro)
Clacu06g1874 913 Pfam Bromodomain extra-terminal - transcription regulation 492 553 IPR027353 -
Clacu06g1874 913 MobiDBLite consensus disorder prediction 692 727 - -
Clacu06g1874 913 MobiDBLite consensus disorder prediction 751 812 - -
Clacu06g1874 913 CDD Bromo_plant1 338 435 IPR037377 -
Clacu06g1874 913 MobiDBLite consensus disorder prediction 575 658 - -
Clacu06g1874 913 SUPERFAMILY Bromodomain 317 443 IPR036427 GO:0005515(InterPro)
Clacu06g1874 913 MobiDBLite consensus disorder prediction 694 721 - -
Clacu06g1874 913 ProSiteProfiles NET domain profile. 482 563 IPR027353 -
Clacu06g1874 913 Gene3D - 487 563 IPR038336 -
Clacu06g1874 913 SMART bromo_6 330 440 IPR001487 GO:0005515(InterPro)
Clacu06g1874 913 Coils Coil 765 813 - -
Clacu06g1874 913 MobiDBLite consensus disorder prediction 446 484 - -
Clacu06g1874 913 MobiDBLite consensus disorder prediction 841 913 - -
Clacu06g1874 913 ProSiteProfiles Bromodomain profile. 349 421 IPR001487 GO:0005515(InterPro)
Clacu06g1874 913 MobiDBLite consensus disorder prediction 855 874 - -
Clacu06g1874 913 Pfam Bromodomain 341 425 IPR001487 GO:0005515(InterPro)
Clacu06g1874 913 MobiDBLite consensus disorder prediction 624 657 - -
Clacu06g1874 913 PRINTS Bromodomain signature 352 365 IPR001487 GO:0005515(InterPro)
Clacu06g1874 913 PRINTS Bromodomain signature 368 384 IPR001487 GO:0005515(InterPro)
Clacu06g1874 913 PRINTS Bromodomain signature 384 402 IPR001487 GO:0005515(InterPro)
Clacu06g1874 913 PRINTS Bromodomain signature 402 421 IPR001487 GO:0005515(InterPro)
Clacu06g1874 913 PANTHER TRANSCRIPTION FACTOR GTE8 215 892 IPR052442 -
Clacu06g1874 913 MobiDBLite consensus disorder prediction 275 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1874 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2491 Clacu-Chr1:35310356 Clacu06g1874 Clacu-Chr6:29182980 2.10E-40 dispersed
Clacu05g1481 Clacu-Chr5:17933959 Clacu06g1874 Clacu-Chr6:29182980 2.80E-160 dispersed
Clacu06g1874 Clacu-Chr6:29182980 Clacu09g1708 Clacu-Chr9:30727166 1.50E-38 dispersed
Clacu06g1874 Clacu-Chr6:29182980 Clacu10g0981 Clacu-Chr10:21169482 2.70E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47