Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1877 ATGATACTGAATGAGGATTCCATGGGCTTGACTTTAATGGGCCAGAGGCCCATATTGAACACTGGCCCAACAAGAACGTATTGGCTATTGGCGACGGTGAATCTATATCGTCCTTCGGCTCCTTCTCTCGTCGGAACCAACGCAAGCTTAGACAGTGAAGCGGAACTCTCGAGTCTCGAGTCTCAAGTCAAGATTGCAGACATGGCGGCAACGAAAGAAGCAAAATGTAAAAGTGATTCTGTTGTGAATGATCTTCTCCAGTTCTTGAACGCTTCCCCAACTGCTTTCCACGCCGTTGAGGAGGCAAAGAAGCGTCTACTAAGCGTTGGATATGAACAAGTATCTGAAAGAGCGGACTGGAAATTAGAAGCCGGGAAGAAGTACTTCTTTACCAGAAACCATTCAACTATTGTTGCTTTCGCGATCGGTAAAAAATATGTTGCTGGGAATGGATTTCATATTGTTGGTGCGCATACTGACAGCCCTTGTTTGAAACTGAAGCCCGTGTCCAAGGTAACGAAAGGAGGATATCTGGAAGTTGGCGTTCAAACGTATGGGGGTGGGTTGTGGCACACATGGTTTGACCGTGACTTAACAGTTGCTGGAAGGGTGATTATAAAGGAAGAAAAAGGTGGTTCTGTTTCATATATTCATCGACTTGTTCGAGTTGAGGATCCTATAATGAGAATCCCGACACTAGCAATTCACTTGGACAGGGGCACAGATGGATTTAAGGTGAACACACAGAGTCATCTTCTCCCAGTTTTGGCAACAAGTATTAAGGGGGAATTGAACAAAGTTGTTATCAAGAATGATGCACAACTTGATGGAGAGAAAACAGATCCTAAATCCAGTCCCAATAGCTCAAAGCATCACACGCTTCTATTACAGCTACTTGCCGATCAACTCAAATGTGAACCAGATGACGTATGCGATTTTGAATTGCAAGCTTGTGACACACAACCTAGTGTGGTTGGTGGTGCCCAGAAGGAATTCATTTTCTCTGGAAGGCTTGATAATTTATGCATGTCATTTTGCTCTTTGAAGGCGCTGATTGACAGTACATCTTCTCAAACTAGCCTTGAGAATGAGCCTGGCGTTAGAATGGTGGCCTTGTTTGACCATGAAGAAGTTGGATCTGATTCGGCCCAGGGAGCTGGTTCCCCAGCAATGCTTAATGCTTTATCACGAATTACAAACTCCTTCAGCTCTGACTCTTCGCTGGTTGAGAAAGCTATCCAGAGAAGTTTCCTGGTCTCAGCTGACATGGCACATGCATTACACCCTAATTATATGGATAAGCATGAAGAAAATCATCAGCCCAAGTTGCATGGAGGGTTGGTTATCAAGAACAATGCAAATCAGCGATATGCAACCAACGCAGTCACATCATTCATATTCAGGGAATTGGCTGTGAATCATAACCTTCCTGTTCAGGATTTTGTGGTCCGCAACGACATGGCTTGTGGTTCAACCATCGGCCCCATTCTTGCCAGTGGCGTAGGTATACGAACAGTAGATGTTGGAGCACCACAGCTATCAATGCACAGTATTCGGGAAATGTGTGCTACAGATGATATCAATCACTCGTACGAGCATTTTAAGGCCTATTACGAAGAGTTCTCTAGTCTCGATGAGAAGATCACTGTCGATACTCGTCGAAGGAGGGCGGGTTTGAGTGAACTACCGAACTGTCCCACATCGAAAAGAAGTAGATATGCCGCAAGAGGAATGCCTATAAAATGCGCATACAAGGAGATGGGAAAGGCACGGAGCCGTGCGGTGAGCACAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCTCATAGCGGCATACGCCTATTTTTGGAGGGGTTTCTCTTCGGGGAAGCTCCTACAGATTAG 1902 45.37 MILNEDSMGLTLMGQRPILNTGPTRTYWLLATVNLYRPSAPSLVGTNASLDSEAELSSLESQVKIADMAATKEAKCKSDSVVNDLLQFLNASPTAFHAVEEAKKRLLSVGYEQVSERADWKLEAGKKYFFTRNHSTIVAFAIGKKYVAGNGFHIVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIKEEKGGSVSYIHRLVRVEDPIMRIPTLAIHLDRGTDGFKVNTQSHLLPVLATSIKGELNKVVIKNDAQLDGEKTDPKSSPNSSKHHTLLLQLLADQLKCEPDDVCDFELQACDTQPSVVGGAQKEFIFSGRLDNLCMSFCSLKALIDSTSSQTSLENEPGVRMVALFDHEEVGSDSAQGAGSPAMLNALSRITNSFSSDSSLVEKAIQRSFLVSADMAHALHPNYMDKHEENHQPKLHGGLVIKNNANQRYATNAVTSFIFRELAVNHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCATDDINHSYEHFKAYYEEFSSLDEKITVDTRRRRAGLSELPNCPTSKRSRYAARGMPIKCAYKEMGKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEGFLFGEAPTD 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29206006 29212550 + ClG42_06g0187700.10 Clacu06g1877 252525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1877 633 PANTHER ASPARTYL AMINOPEPTIDASE 74 551 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Clacu06g1877 633 Gene3D Aminopeptidase i, Domain 2 162 321 IPR023358 GO:0004177(InterPro)
Clacu06g1877 633 Gene3D Zn peptidases 85 537 - -
Clacu06g1877 633 FunFam Aspartyl aminopeptidase 1 163 322 - -
Clacu06g1877 633 SUPERFAMILY Aminopeptidase/glucanase lid domain 164 316 - -
Clacu06g1877 633 Pfam Aminopeptidase I zinc metalloprotease (M18) 88 538 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Clacu06g1877 633 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 152 168 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Clacu06g1877 633 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 185 205 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Clacu06g1877 633 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 416 432 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Clacu06g1877 633 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 505 520 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Clacu06g1877 633 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 373 391 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Clacu06g1877 633 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 224 241 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Clacu06g1877 633 FunFam Probable aspartyl aminopeptidase 311 538 - -
Clacu06g1877 633 SUPERFAMILY Zn-dependent exopeptidases 79 539 - -
Clacu06g1877 633 CDD M18_DAP 82 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1877 K01267 - - csv:101216468 914.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1392 Clacu-Chr2:27172501 Clacu06g1877 Clacu-Chr6:29206006 1.10E-08 dispersed
Clacu05g2364 Clacu-Chr5:32036462 Clacu06g1877 Clacu-Chr6:29206006 8.20E-159 dispersed
Clacu06g1876 Clacu-Chr6:29198203 Clacu06g1877 Clacu-Chr6:29206006 8.40E-227 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g144 . Blo16g00264 . . . . . . . . . Cma11g00045 . Car11g00040 . . Cpe04g01605 Bhi02g00539 . . . Hepe09g0063 . . Cla06g01730 Cam06g1921 Cec06g1971 Cco06g1975 Clacu06g1877 Cmu06g1819 Cre06g2634 . Cone16ag0029 . . . . . . . . . . . Bpe15g00210 Bma03g01265 . . . Cmo11g00046 . . . . . . . . . . . . . . . . . . . . Lsi06g01628 Csa01g00070 Chy02g02650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003516 0 2 1 1 1 2 1 2 2 2 1 2 1 1 1 2 2 2 1 2 2 1 2 2 1 2 2 4 1 1 47