Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1878 ATGACGTCGACGTATCTTCTCTATGAATCTGCTTCTGGTTATGCTCTGTTTCATGTCCATGGCCTTGACGAAATTGGGCAGAACACGGAAGCCGTTCGGAGCTCCGTCTCCGACCTTAACCGCTTCGGCAAGGTCGTGAAGCTTGCTGCTTTCCACCCTTTCGAGTCGGCTCTCGATGCTCTCAAGCAGTGCAACTCAGTCTCTGAAGGGCTCATGACTGACGAGTTGAGGAGTTTTTTGGAAATTAACCTTCCAAAAGTTAAGGAAGGTAAGAAGGCCAAGTTCGTTTTGGGACTAGCTGAACCCAAAATTGGGTCAAACATCTTTGAAGAGACTAAAATCCCATGCCAAAGCAATGAGTTTGTTCTGGAGCTGCTCCGGGGTGTGCGTCTACACTTTGACAAATTTATCAAAGACCTCAAGCCAGGGGATTTGGAGAAGGCCCAACTTGGTTTGGGACACAGTTACAGTCGAGCTAAAGTAAAGTTCAATGTTAACCGTGTTGATAATATGGTGATTCAGGCGATCTTCCTTCTTGACACTCTAGATAAGGACATCAATTCCTTCTCAATGAGAGTCAGAGAGTGGTATTCGTGGCATTTCCCTGAGTTGGTGAAGATTGTCAGTGACAATTATCTTTATGCTAAAGTTGCTAAATTTATTGAGGACAAGTCGAAGTTGGCAGAAGATAAAATCCCTGCCTTGACTGACATAATTGGCGATGAAGATAAAGCGAAGGAGATTGTTGAAGCAGCCAAAGCCTCCATGGGCCAGGATTTGTCTGCCATTGACTTGATTAATGTCCAGCAATTTGCACAGAGGGTGATGGATCTTTCTGAATACAGGAAGAAGCTGTATGATTATCTAGTTGCTAAAATGAATGATATTGCTCCCAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGGGCCCGTTTAATTTCTCATGCGGGCAGTCTCACAAATTTGGCCAAGTGCCCTTCTTCCACCCTTCAGATTCTTGGTGCGGAGAAAGCACTCTTCAGGGCTTTGAAAACAAGAGGAAACACTCCTAAATATGGTCTGATTTTTCATTCTTCTTTCATTGGGCGAGCATCTGCACGGAACAAAGGCCGAATGGCTCGTTATCTTGCAAATAAATGTTCTATTGCATCACGTATTGATTGCTTTGCAGAGAGCAGCACCACAACCTTTGGAGAAAAACTTCGTGAGCAAGTTGAAGAGCGCCTTGACTTTTATGACAAGGGAATAGCACCTCGTAAAAACATAGATGTTATGAAAGCTGCAATTGAAAGTGCTGATAACAAAGCAACTGATATGGATGTAGAAGAAGTGCCAAGTGAAGCTTCAGGGAAGAAGAGCAAGAAAAAGAAATCAAAAGCTAATGTGAATGGCGAAGTTGAAGACAGGCCAAGTGCGACTGAAAACGGTGATGTTTCAGAGGATACAAAATCAGAAAAGAAGAAAAAGAAGGAGAAGCGAAAGTTGGATAGGGAAACAGAGGAGCAGCAGCAGGCTGCAGAAATCGTAAATGGAGTAAACGGGGAGGAGGAATCTGGCAAGAAGAAGAAGAAAAAGAAGAGCAAGGATGAAAATAAGGGGGATGATCATGTTGCTGCAGAAGATGAGCAGACGGTTGAAGAAGAAGAAGACGTCGACGACGACCACGACCAAACAGCCATGGCCAGTAGTTCTGGATCAGCGAGCTTAGAAGATGTCCCTTCCATCCATCTCATGACCGAGCTCCTCCGTCGCATGAAATGCGCTTCAAAACCCGACAAGCGCCTCATTCTCATTGGTCCACCTGGATCAGGAAAAGGCACCCAATCTCCAATCATCAAGGATGAGTACTGCTTGTGTCACTTGGCAACTGGTGATATGTTAAGAGCTGCTGTTGCTGCTAAAACTCCACTTGGTGTTAAGGCTAAGCAGGCCATGGACAAGGGTGAACTTGTGTCTGATGACTTGGTTGTTGGCATCATTGAGGAAGCAGTGAAGAAGCCTTCATGTCAGAAAGGTTTCATTCTTGATGGATTTCCCAGAACCGTGGTCCAAGCACAGAAGCTGGATGAGATGCTAGAAAAGCAGGATGCTAAAATTGATAAGGTGCTTAATTTTTCGATTGATGATGCGATCTTGGAGGAGAGGATTACTGGACGATGGATACACCAAGCGAGCGGAAGGTCTTATCACACAAAATTTGCTCCTCCAAAGGTTGCTGGTGTCGATGATGTAACGGGAGAACCTTTGATTCAACGTAAGGATGATACTGCAGCAGTTCTCAAATCTCGGCTGGAGGCTTTCCACAAGCAAACAGAACCGGTGATTGATTACTATTCCAAGAAGGAAATTGTCGCAGATCTTCAAGCAGAGAAGCCTCCCAAACTGCCCCCATTGGAATTGCATTGCTATTTGAATAGATGCTTTCAATCCGATTCACTTGCTGATTTCTGGCCCACTTTATTCCTGCTTCACCCAGTCTGCATCCTGGCCTTTGGTTGGGAATCAATTAGATCGGAGACAATTTTTCAATAG 2532 44.71 MTSTYLLYESASGYALFHVHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALKQCNSVSEGLMTDELRSFLEINLPKVKEGKKAKFVLGLAEPKIGSNIFEETKIPCQSNEFVLELLRGVRLHFDKFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVSDNYLYAKVAKFIEDKSKLAEDKIPALTDIIGDEDKAKEIVEAAKASMGQDLSAIDLINVQQFAQRVMDLSEYRKKLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAESSTTTFGEKLREQVEERLDFYDKGIAPRKNIDVMKAAIESADNKATDMDVEEVPSEASGKKSKKKKSKANVNGEVEDRPSATENGDVSEDTKSEKKKKKEKRKLDRETEEQQQAAEIVNGVNGEEESGKKKKKKKSKDENKGDDHVAAEDEQTVEEEEDVDDDHDQTAMASSSGSASLEDVPSIHLMTELLRRMKCASKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKQAMDKGELVSDDLVVGIIEEAVKKPSCQKGFILDGFPRTVVQAQKLDEMLEKQDAKIDKVLNFSIDDAILEERITGRWIHQASGRSYHTKFAPPKVAGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKEIVADLQAEKPPKLPPLELHCYLNRCFQSDSLADFWPTLFLLHPVCILAFGWESIRSETIFQ 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29217719 29225568 - ClG42_06g0187800.10 Clacu06g1878 252526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1878 843 Hamap Adenylate kinase [adk]. 593 799 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Clacu06g1878 843 ProSitePatterns Adenylate kinase signature. 673 684 IPR033690 -
Clacu06g1878 843 MobiDBLite consensus disorder prediction 540 555 - -
Clacu06g1878 843 Gene3D - 566 795 IPR027417 -
Clacu06g1878 843 Coils Coil 485 508 - -
Clacu06g1878 843 CDD ADK 594 794 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Clacu06g1878 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 782 IPR027417 -
Clacu06g1878 843 MobiDBLite consensus disorder prediction 434 570 - -
Clacu06g1878 843 MobiDBLite consensus disorder prediction 514 539 - -
Clacu06g1878 843 Pfam Adenylate kinase, active site lid 719 754 IPR007862 GO:0004017(InterPro)
Clacu06g1878 843 Pfam Adenylate kinase 597 782 - -
Clacu06g1878 843 NCBIfam adenylate kinase 594 792 IPR006259 GO:0004017(InterPro)|GO:0005524(InterPro)|GO:0016776(InterPro)
Clacu06g1878 843 FunFam Adenylate kinase mitochondrial 593 801 - -
Clacu06g1878 843 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
Clacu06g1878 843 SUPERFAMILY Nop domain 164 413 IPR036070 -
Clacu06g1878 843 MobiDBLite consensus disorder prediction 434 451 - -
Clacu06g1878 843 FunFam Nucleolar protein 56 300 412 - -
Clacu06g1878 843 SMART NOSIC_2 171 223 IPR012976 -
Clacu06g1878 843 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Clacu06g1878 843 Gene3D Nop domain 300 412 IPR042239 -
Clacu06g1878 843 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Clacu06g1878 843 PRINTS Adenylate kinase signature 624 638 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Clacu06g1878 843 PRINTS Adenylate kinase signature 752 767 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Clacu06g1878 843 PRINTS Adenylate kinase signature 673 689 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Clacu06g1878 843 PRINTS Adenylate kinase signature 769 783 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Clacu06g1878 843 PRINTS Adenylate kinase signature 596 609 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Clacu06g1878 843 Gene3D - 142 299 - -
Clacu06g1878 843 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 5 532 IPR045056 GO:0030515(PANTHER)|GO:0030515(InterPro)|GO:0031428(InterPro)|GO:0031428(PANTHER)|GO:0032040(PANTHER)|GO:0032040(InterPro)
Clacu06g1878 843 MobiDBLite consensus disorder prediction 459 503 - -
Clacu06g1878 843 FunFam Nucleolar protein 56 141 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1878 K14564 - - csv:101216223 957.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1878 Clacu-Chr6:29217719 Clacu11g0498 Clacu-Chr11:4719854 3.00E-30 dispersed
Clacu02g1674 Clacu-Chr2:30176680 Clacu06g1878 Clacu-Chr6:29217719 1.00E-90 transposed
Clacu03g0361 Clacu-Chr3:4061733 Clacu06g1878 Clacu-Chr6:29217719 1.70E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45