Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1891 ATGGACACCAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTCCCGGCCCCTCCCTTCCACCACCTCCTTCAGCAGCAGCAGCAACAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTCTCGCCCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAGGCCCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATTACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGCATGGTCGGAGCTACTGCTAGCGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGGCTCCCGGCGGGATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTATGCTCAGCCGCCGTCCCAGGCATGGCAATCCGTGTGGCAGACCGCTGCTGAGGACGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGTAATCTTGATGGTCAGAGGTAG 663 55.35 MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQR 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29359566 29360228 - ClG42_06g0189100.10 Clacu06g1891 252539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1891 220 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677(InterPro)
Clacu06g1891 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 32 140 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Clacu06g1891 220 MobiDBLite consensus disorder prediction 1 23 - -
Clacu06g1891 220 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982(InterPro)
Clacu06g1891 220 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
Clacu06g1891 220 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1891 Clacu-Chr6:29359566 Clacu09g1425 Clacu-Chr9:19910826 9.60E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47962 PF00808 CBFD_NFYB_HMF 2.20E-17 CL0012 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1891 - - - 0.0