Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1907 ATGGAAACCTCACAGCGGGAAACGAGTTATAGACGAGTTCCAGATGAACCAGAGCTCGATCTATACACCATTCCAAGTCACTCCAGTTGGTTTTCGTGGGACGAAATTCACGAAACGGAGAAATTAGCTTTGAAGGAGTTTTTTGATGGAAGCTCAATATCAAGAACGCCGCGCATATATAAAGAATATAGAGATTTTATTATCAATAAGTACAGGGAAGAGCCTTCCAGCAGGCTTACGTTCACCGAAATTCGGAAGTCTCTGGTGGGAGATGTTAATTTGCTTCATAAGGTGTTTATTTTCTTGGAGACATGGGGGCTGATCAACTTTGGCGCAACTTCGGATGACAATGATTTGACGGAGGTGGAAGATGGAGAGAGTTCTATAATTAAGATTGAAGAGGGGGTTCCCAATGGGATTCGTGTGGGAGCAACGCCAAATTCGGTCAAGCCAATTTCAGCACCACCTGCTGTGGAAGACGGTGCTATTGTTAATGGGAGCGGGTTTAAATTGCCCCCTTTGACTTCTTATTCAGATGTTTTCAGTGACTTGTTGAAACAGAAGATTTTAGCGTGTGGGAACTGTGGCCAGCATTGTGGATCTAGATACCATCAATGCGCCAAGGATGGTTATTTAATCTGCGAAAACTGTTTCAATGATGGAAATTATGGGGAGCAGAGGCTTTCAGAAGATTTTGAGTTGAAGACCAACGAGTTCGTTGAAGATGGTAGCAATACCGGAGCTGTGTGGACTGAGGCTGAAACTCTGCTTCTTTTGGAATCCGTTTTGAAGCATGGAGATGACTGGGAACTCGTTGCTCAAAATGTTCAAACCAAGACTAAATTGGATTGTATATTGAAGCTTGTAGAGTTGCCGTTTGGGGATTCCTTGTTATGCTCTGAAGCTCAAAGGAACGAGGTTAGTGGTTCCACTAACAACCTTACTAGTGAAAAGGAAATTACAGACGCTCCAACTAACAATCAGGAGATCGCCGGAAGTGAAGACCAAGGTACCAAGGACATAAATGAGGACAAAGATGAAGAGAACCAAGGTCCTCCCAAGCGACAATGCACCGCTTATGTTCAAGATACGAGCAGTTCTCTGATGAAACAGGTAGCTTTGATATCAAGCATGGTTGGACCACATATTATGGGGGCAGCTGCTACTGCTTCTGTTACAGCACTTTGTGACGAAAACTTATATCCTAAAGAAATATTTGATGATCAAGATTTTTTTGTCCCTAATGGATTGTGTTCTGCGGCTTCCACCACAGCAAATCATGAGATTGAGAGAATTCTCAATAACGAAGATTCAGTGGCAAAGGAAAGGCCTCCTCAATCAGGTGATGTAATGGCGGAGGACAAAGGTGACATACCTTTAATCTTGCGGGTTAGAGCTGCGATTGCAACAGCCCTTGGTGCTGCTGCAGCACGTTCAAAATTACTTGCTGATCAAGAAGAGAGAGAAATGGAATATTTATTGGCGATAATGATAGAAACACAGATGAAGAAGATGCATCGCAAAATTAAGCATTTTGAAGATCTCGAGCTGATTATGGAAACAGAATGTCCTGTGATTGAGGAACTAGAAGATAAACTGTTAATGGAGCGGGTTAGTGTCTTGCAATCTGCATTTGATCTTGGTATATCTAGGTGGAAGGATTATCCTTCTGTGAGATCTTGA 1683 42.66 METSQRETSYRRVPDEPELDLYTIPSHSSWFSWDEIHETEKLALKEFFDGSSISRTPRIYKEYRDFIINKYREEPSSRLTFTEIRKSLVGDVNLLHKVFIFLETWGLINFGATSDDNDLTEVEDGESSIIKIEEGVPNGIRVGATPNSVKPISAPPAVEDGAIVNGSGFKLPPLTSYSDVFSDLLKQKILACGNCGQHCGSRYHQCAKDGYLICENCFNDGNYGEQRLSEDFELKTNEFVEDGSNTGAVWTEAETLLLLESVLKHGDDWELVAQNVQTKTKLDCILKLVELPFGDSLLCSEAQRNEVSGSTNNLTSEKEITDAPTNNQEIAGSEDQGTKDINEDKDEENQGPPKRQCTAYVQDTSSSLMKQVALISSMVGPHIMGAAATASVTALCDENLYPKEIFDDQDFFVPNGLCSAASTTANHEIERILNNEDSVAKERPPQSGDVMAEDKGDIPLILRVRAAIATALGAAAARSKLLADQEEREMEYLLAIMIETQMKKMHRKIKHFEDLELIMETECPVIEELEDKLLMERVSVLQSAFDLGISRWKDYPSVRS 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29429287 29431987 - ClG42_06g0190700.10 Clacu06g1907 252555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1907 560 ProSiteProfiles SWIRM domain profile. 22 119 IPR007526 GO:0005515(InterPro)
Clacu06g1907 560 Pfam SWIRM-associated region 1 470 543 IPR032451 -
Clacu06g1907 560 Gene3D - 28 114 IPR036388 -
Clacu06g1907 560 Pfam SWIRM domain 32 110 IPR007526 GO:0005515(InterPro)
Clacu06g1907 560 CDD SANT 250 287 IPR001005 -
Clacu06g1907 560 MobiDBLite consensus disorder prediction 336 352 - -
Clacu06g1907 560 MobiDBLite consensus disorder prediction 308 356 - -
Clacu06g1907 560 FunFam SWI/SNF complex subunit SMARCC2 isoform c 28 115 - -
Clacu06g1907 560 MobiDBLite consensus disorder prediction 308 335 - -
Clacu06g1907 560 Gene3D - 246 295 - -
Clacu06g1907 560 SUPERFAMILY Homeodomain-like 20 114 IPR009057 -
Clacu06g1907 560 Pfam Myb-like DNA-binding domain 250 288 IPR001005 -
Clacu06g1907 560 ProSiteProfiles SANT domain profile. 245 296 IPR017884 -
Clacu06g1907 560 SMART sant 246 294 IPR001005 -
Clacu06g1907 560 ProSiteProfiles Myb-like domain profile. 250 284 IPR001005 -
Clacu06g1907 560 PANTHER SWI/SNF COMPLEX-RELATED 41 544 - -
Clacu06g1907 560 SUPERFAMILY Homeodomain-like 246 292 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1907 K11649 - - csv:101222310 975.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1907 Clacu-Chr6:29429287 Clacu11g2089 Clacu-Chr11:31677469 5.80E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g72 . . . Bda15g00681 Bpe12g00472 . . . . . Cma10g00047 . Car10g00036 . Sed01g2393 . . Bhi02g00661 Tan09g2396 Cmetu07g1239 . . . . Cla06g01758 Cam06g1950 Cec06g1999 Cco06g2005 Clacu06g1907 Cmu06g1847 Cre06g2661 . . . Cone19ag0221 . . . . . . . . . . . Bma08g00266 . Cmo10g00042 . . . . . . Cpe18g00918 . . . . . . . . . . . . . . Lsi06g01656 Csa01g00039 Chy02g02680 Cme02g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009523 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33