Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1928 ATGGGTGTGTCAAAAGATGGGCAACGACAATCTCCGGTGCCAAGCTTTGTGTATTCTGGCAACAGGGGATGTTTCCAAACCCAAACACTGGTTAGGCGCTTCCCAATTGAAGCTCCGAAAGATAATATAAAGATGTATTCACCGGCCTTCTACGCGGCTTGCACAGCAGGCGGCATTTTGAGTTGTGGACTCACCCACATGGCTGTCACCCCCCTCGATCTCGTCAAGTGCAACATGCAGATCGACCCAGCAAAGTACAAGAATATCTCGTCTGGTTTTGGAATTCTGCTAAAGGAGCAGGGAGTGAAAGGGTTCTTCCGGGGTTGGGTGCCAACGTTGCTTGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGATTTTACGAGTTCTTCAAGAAGTACTATTCTGATATGGTTGGAACAGAGAATGCAGTCAAGTACAAAACTTTCATATACCTTGCTGGCTCAGCATCTGCAGAAGTGATTGCCGATGTCGCTCTCTGCCCCATGGAGGCCGTCAAAGTTCGTGTCCAGACTCAACCTGGCTTTGCTCGGGGTTTGTCAGATGGCCTTCCAAAGTTTGTCAAGTCTGAGGGTGCTCTCGGACTCTACAAAGGTCTGGTTCCTCTTTGGGGACGTCAGATTCCATATACCATGATGAAATTTGCTTCTTTCGAAACAATTGTTGAGATGCTTTACAAGTATGCCATCCCAAGGCCAAAAGAACAGTGTAGCAAATCTCTGCAGCTTGGAGTGAGCTTTGCCGGAGGGTATGTGGCCGGCGTCCTATGTGCTGTGGTCTCACACCCAGCCGACAATCTTGTCTCTTTTCTCAACAATGCCAAGGGTGCAACTGCTGGGGATGCTGTCAAGCAGCTGGGAGTATGGGGTCTCTTCACTCGTGGCCTTCCGCTTCGGATTGTTATGATTGGAACTCTTACTGGGTCGCAATGGGGTATATACGACGCGTTCAAAGTTTTCGTTGGACTGCCAACAACTGGTGGCGCTACCCCTGCTCCTGCCGCTAGCAAGTGA 1032 49.9 MGVSKDGQRQSPVPSFVYSGNRGCFQTQTLVRRFPIEAPKDNIKMYSPAFYAACTAGGILSCGLTHMAVTPLDLVKCNMQIDPAKYKNISSGFGILLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDMVGTENAVKYKTFIYLAGSASAEVIADVALCPMEAVKVRVQTQPGFARGLSDGLPKFVKSEGALGLYKGLVPLWGRQIPYTMMKFASFETIVEMLYKYAIPRPKEQCSKSLQLGVSFAGGYVAGVLCAVVSHPADNLVSFLNNAKGATAGDAVKQLGVWGLFTRGLPLRIVMIGTLTGSQWGIYDAFKVFVGLPTTGGATPAPAASK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29550412 29551854 - ClG42_06g0192800.10 Clacu06g1928 252576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1928 343 Gene3D Mitochondrial carrier domain 49 327 IPR023395 -
Clacu06g1928 343 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 36 335 IPR044677 GO:0005315(InterPro)|GO:0005315(PANTHER)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Clacu06g1928 343 FunFam Phosphate carrier protein, mitochondrial 49 327 - -
Clacu06g1928 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 146 230 IPR018108 -
Clacu06g1928 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 49 133 IPR018108 -
Clacu06g1928 343 Pfam Mitochondrial carrier protein 147 234 IPR018108 -
Clacu06g1928 343 Pfam Mitochondrial carrier protein 51 136 IPR018108 -
Clacu06g1928 343 SUPERFAMILY Mitochondrial carrier 52 322 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1421 Clacu-Chr5:16662489 Clacu06g1928 Clacu-Chr6:29550412 2.20E-150 dispersed
Clacu06g1928 Clacu-Chr6:29550412 Clacu09g1217 Clacu-Chr9:12235511 3.70E-11 dispersed
Clacu09g0174 Clacu-Chr9:1637669 Clacu06g1928 Clacu-Chr6:29550412 4.00E-06 dispersed
Clacu06g1928 Clacu-Chr6:29550412 Clacu09g1214 Clacu-Chr9:12216478 2.90E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1928 K15102 - csv:101220423 608.986