Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1933 ATGGTCTGTAAATTTGTTAGTGTCCCCACACTTGAAGTAGGTGAAATGAGAATGGTCCGCTTGTTTCTTGAAATCCAAAAAGATCCATATCAGAATTCTGTTAGGACGCTGTCAGAAACAGAAAGACCTGGCACCTTATCCAGAATGGAGTCGATGAAATCAGCTGAAGTATGGCAGTCCGAGGAGTCTGGAGTTTTGATGGTGCTCGCGTCCCAAGTCATAAACCGCTGCAGAACATATATCGCCGTCGGTCGCGTGTACATCACCGCGTGCAGGAGTTCGCCATTCACCCTTGTGGGCGCCGACGGAAACAGAAACCGAAAAGGTATCGCCTGCTCTGCTGCACCTTCTTCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGATGGGCAAGGCATGGCAATTGGCAATGGCATCCCCAACCACCAACTTTATTTGCTTTTGCTAATTTGTTTACTTTTCCCTTTTCCCTTTTCCAACAGGGAGAGAAAGCGAGGTCTGATACCATATACATACGCTTCGCTTCGCTTTACTTTTCTTTTCAAGACACTGTACAAACTACAGTACTACCATTCACTTCCACTCAACCTTTCCTTCTGTTATGGAAAAACACCATCCCCTTCATCATCAGGTGCCCCTTTTCTTCCCTCTCTCAACTCCTTTCATTCTCTTCCTCTGATCTCATCCCCTCTCTTTTATGTTATGCCGGAATACCAGGATATCAAGGACCTCGACTTGGATCTCGGACCCGACGAGCCTGATCTTGCCCCTCTCCCCCCCACCGTTACTTCCCGGGTACTGCACATGTTGGGAGACATCGCAGCAGGTCCCGCTTACAGGTTTTCCCAATGGCTTGAACTCGTCCGTAAACGTAGCGGCAAACATCGCGCTTCTGCCTTCCACAACCGCCCTCATCCACCTTTCGATATGCCTTTCGGCGCTGAGGAGCTTGTCAATGAATCAAGAACTCTTCCAGCTCCCGAGCAATCAACTGAAACGAATTTGTGGGATAGACTCGCTAAAGCTTCAATGTTGGATATCGAGTCGAGCTGTTTTTCGTGGGATAGGCTTTTGTCGCTTCACCGCACCGAACACAGTAGTAGCACCGAACATTCGGAAGATGAGATGAATAAAGCCCTTGAGGTCACTGTAAATTCTGGTGGAGTCGTTTTCTTTGCACTGTTCAATCAGCTTGGATATGATGATAACGTCCCAAAGGAAGCAGCTGCTGTGATAAAGATATCATCTTCAAGAATGGCCACGCAATCTGAACGCCTTGGTTATGAATTTGCTAAGTGGCTTGGGGTTCAAACTCCACAGGCTAGAGTTATTCATAATTCCAGCACGGAATGGCTCCAGATAAAAGAAGCTGCAGAGAAAGCACGAGATATTGCCTGTTTGGAGGGTGATGAGGTTGGTGAAATGACATGTTCTGAACTATTGGAAGCACTTGAATTTAGCAGATGCCTTTTTCTGATGAGCTATGTGCATGGATCTCCATTGTTGGAAAGTGCATTTGAATCACGAGAAATGGCTGAAAAATTAGCTGCTGCAATTGGAAGGATCTTACTGTTGGACCTTGTCATTAGAAATGAAGATAGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCGGCAAATTTGCTCTTGGCTGATAGAATGACATCTGCAAATATGAATGCATTTGAGGAAGCCTTTGATTCTGCTATTATGCGATACAAACCAAAAGTCATTACAACGCTTCAAAAAGAAAGAAGGGCAACTTCAGTGGATAATAGATCGAGTTCTAATTCAGGGTTGGTTTCAGAGGTGTCTGAACTTTGTGATATTGTTGAATCCCCAAAATCTAGTAACCGAAGTATAAAAAGTCAAATATCAGATGAAGCATTGCCTTGTGATTTTAATATTGTGGCTATTGACTCTGGTGTTCCTCGTCGACCTCCTGCTGGAAAACGTGCTAATGATCAATCAATTTACCCAAAATTAGTCGAGTTGCTACTTAACAGTTCTGAGTTCTCCTCTAATCTGCTGCATGACATTACAGGAGGGAAATTAGGGTTCCCTTCATCAACTGATGCCAACTCAACTTGTGGCATGCAGCTTACAGATATGAGTTCTATTGTCCATGAATTTCGATATGGGTTTCGTGCTGCTCTTAGAGACTTGCAAGGATTTCACATATTTTTGCTTACCCTTCACCAAAAGTTAGACAACTCATTACGAGCGTTCATGAGTATCATAAATAAATTTCCCTTGGGGGAATCTGACAAAGAGGATGCAGGGATTCCTGAGTCCCATTTGCAGGGTTCTACCACTACTCATTGTTTATCTCCACGTGGTAAGGAACGAGCCTCTAGTGATGGTAATATAGATGTTACAGAGTCAGCTCTAAGATCATCATCGTCAGGAAACAAAGAAAGCTCAGACTTATCTTCTCCCTTGTCACGAGATAGCTCACAAGGAAAGCTATACAAAGGAAGTGCAGAGCCCATTCATAGCCTTCGTTTGACTGCAAAGCTTCGAGACTTTCATAAATTTGCCAAAGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAGTGCTAAAGAATGAAGCTGTTAAACTCTGCCAGGAGAATAAATTTAATACTGGGTTTTTTGAGGGCAGCGATAGTCATGGAGTTGTTGATGCTTATGAATTGAAGGTGAGACTTGAGCACATTCTTGAAAGGATTGCACTAATATCTGAGGCTGCAAATACAGAAAGGCCTTCTTCAGTTACACCTGCCTTGTTTATAGGCGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAGTTACTCATATTTTATGTCTCTGCTCAAATGAAATTGGGCAGTCAGATTCTCAGTTTCCTGATCTATTTGAATACAAAAATTTTTCAATAAGTGATGATGAAGACTCAAACATCAGCAGCATCTTTGAAGAAGCTTCTGATTTTGTTGATGACGTTGAAAGAAAGAGTGGGAAGGTCCTGGTTCATTGTTTTGAAGGGAAAAGCAGAAGTGCCACATTAGTTCTTGCTTACTTGATGCTCAGAAAGAAATACACACTGTTAAAAGCATGGAATGCCTTGAAACGGGTTCACCGGCGAGCTCAACCTAATGATGGGTTTGCCAAAACATTATTAGAGTTAGATCGAAGAATACATGGAAAGGTATCCATGGAGTGGCAATCACGAAAACCAACCATGAAAGTTTGCCCAATTTGTGGGAAAAATGCTGGACTGAGCAGTAGCTCACTGAAACTTCATTTGCAAAAATCACACAAGAAGCTATCATCTGGGAGTGTAGACAGCGCAATGACCATGGAAATACAGAAAGCATTGACAGCTCTGAGGATCAGTCGTGGAGGAAGCGTGAGCCCAACCCAAAGGCAATCTCTTCTCATCTTGGATGAATAG 3462 43.24 MVCKFVSVPTLEVGEMRMVRLFLEIQKDPYQNSVRTLSETERPGTLSRMESMKSAEVWQSEESGVLMVLASQVINRCRTYIAVGRVYITACRSSPFTLVGADGNRNRKGIACSAAPSSSSSSSSSSSSSSSSSSSDGQGMAIGNGIPNHQLYLLLLICLLFPFPFSNRERKRGLIPYTYASLRFTFLFKTLYKLQYYHSLPLNLSFCYGKTPSPSSSGAPFLPSLNSFHSLPLISSPLFYVMPEYQDIKDLDLDLGPDEPDLAPLPPTVTSRVLHMLGDIAAGPAYRFSQWLELVRKRSGKHRASAFHNRPHPPFDMPFGAEELVNESRTLPAPEQSTETNLWDRLAKASMLDIESSCFSWDRLLSLHRTEHSSSTEHSEDEMNKALEVTVNSGGVVFFALFNQLGYDDNVPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNSSTEWLQIKEAAEKARDIACLEGDEVGEMTCSELLEALEFSRCLFLMSYVHGSPLLESAFESREMAEKLAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLLADRMTSANMNAFEEAFDSAIMRYKPKVITTLQKERRATSVDNRSSSNSGLVSEVSELCDIVESPKSSNRSIKSQISDEALPCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGFPSSTDANSTCGMQLTDMSSIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMSIINKFPLGESDKEDAGIPESHLQGSTTTHCLSPRGKERASSDGNIDVTESALRSSSSGNKESSDLSSPLSRDSSQGKLYKGSAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTPALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDSNISSIFEEASDFVDDVERKSGKVLVHCFEGKSRSATLVLAYLMLRKKYTLLKAWNALKRVHRRAQPNDGFAKTLLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALRISRGGSVSPTQRQSLLILDE 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29570014 29583586 + ClG42_06g0193300.10 Clacu06g1933 252581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1933 1153 ProSitePatterns Tyrosine specific protein phosphatases active site. 1013 1023 IPR016130 GO:0016311(InterPro)
Clacu06g1933 1153 Gene3D Protein tyrosine phosphatase superfamily 904 1072 IPR029021 -
Clacu06g1933 1153 SUPERFAMILY Protein kinase-like (PK-like) 290 664 IPR011009 -
Clacu06g1933 1153 Pfam Dual specificity phosphatase, catalytic domain 938 1067 IPR000340 GO:0016311(InterPro)
Clacu06g1933 1153 MobiDBLite consensus disorder prediction 797 830 - -
Clacu06g1933 1153 ProSiteProfiles Dual specificity protein phosphatase domain profile. 926 1071 IPR020422 GO:0006470(InterPro)
Clacu06g1933 1153 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 926 1070 IPR029021 -
Clacu06g1933 1153 Gene3D - 509 635 IPR036940 -
Clacu06g1933 1153 MobiDBLite consensus disorder prediction 773 787 - -
Clacu06g1933 1153 Pfam Actin-fragmin kinase, catalytic 339 598 IPR015275 -
Clacu06g1933 1153 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 998 1047 IPR000387 GO:0016311(InterPro)
Clacu06g1933 1153 SMART dsp_5 926 1068 IPR020422 GO:0006470(InterPro)
Clacu06g1933 1153 CDD DSP 927 1064 - -
Clacu06g1933 1153 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 263 1152 IPR035010 GO:0004721(InterPro)|GO:0009737(InterPro)|GO:0043622(InterPro)
Clacu06g1933 1153 MobiDBLite consensus disorder prediction 765 833 - -
Clacu06g1933 1153 MobiDBLite consensus disorder prediction 112 139 - -
Clacu06g1933 1153 FunFam Dual specificity protein phosphatase PHS1 898 1072 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1933 K14165 - csv:101220184 1625.53