Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1933 ATGGTCTGTAAATTTGTTAGTGTCCCCACACTTGAAGTAGGTGAAATGAGAATGGTCCGCTTGTTTCTTGAAATCCAAAAAGATCCATATCAGAATTCTGTTAGGACGCTGTCAGAAACAGAAAGACCTGGCACCTTATCCAGAATGGAGTCGATGAAATCAGCTGAAGTATGGCAGTCCGAGGAGTCTGGAGTTTTGATGGTGCTCGCGTCCCAAGTCATAAACCGCTGCAGAACATATATCGCCGTCGGTCGCGTGTACATCACCGCGTGCAGGAGTTCGCCATTCACCCTTGTGGGCGCCGACGGAAACAGAAACCGAAAAGGTATCGCCTGCTCTGCTGCACCTTCTTCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGATGGGCAAGGCATGGCAATTGGCAATGGCATCCCCAACCACCAACTTTATTTGCTTTTGCTAATTTGTTTACTTTTCCCTTTTCCCTTTTCCAACAGGGAGAGAAAGCGAGGTCTGATACCATATACATACGCTTCGCTTCGCTTTACTTTTCTTTTCAAGACACTGTACAAACTACAGTACTACCATTCACTTCCACTCAACCTTTCCTTCTGTTATGGAAAAACACCATCCCCTTCATCATCAGGTGCCCCTTTTCTTCCCTCTCTCAACTCCTTTCATTCTCTTCCTCTGATCTCATCCCCTCTCTTTTATGTTATGCCGGAATACCAGGATATCAAGGACCTCGACTTGGATCTCGGACCCGACGAGCCTGATCTTGCCCCTCTCCCCCCCACCGTTACTTCCCGGGTACTGCACATGTTGGGAGACATCGCAGCAGGTCCCGCTTACAGGTTTTCCCAATGGCTTGAACTCGTCCGTAAACGTAGCGGCAAACATCGCGCTTCTGCCTTCCACAACCGCCCTCATCCACCTTTCGATATGCCTTTCGGCGCTGAGGAGCTTGTCAATGAATCAAGAACTCTTCCAGCTCCCGAGCAATCAACTGAAACGAATTTGTGGGATAGACTCGCTAAAGCTTCAATGTTGGATATCGAGTCGAGCTGTTTTTCGTGGGATAGGCTTTTGTCGCTTCACCGCACCGAACACAGTAGTAGCACCGAACATTCGGAAGATGAGATGAATAAAGCCCTTGAGGTCACTGTAAATTCTGGTGGAGTCGTTTTCTTTGCACTGTTCAATCAGCTTGGATATGATGATAACGTCCCAAAGGAAGCAGCTGCTGTGATAAAGATATCATCTTCAAGAATGGCCACGCAATCTGAACGCCTTGGTTATGAATTTGCTAAGTGGCTTGGGGTTCAAACTCCACAGGCTAGAGTTATTCATAATTCCAGCACGGAATGGCTCCAGATAAAAGAAGCTGCAGAGAAAGCACGAGATATTGCCTGTTTGGAGGGTGATGAGGTTGGTGAAATGACATGTTCTGAACTATTGGAAGCACTTGAATTTAGCAGATGCCTTTTTCTGATGAGCTATGTGCATGGATCTCCATTGTTGGAAAGTGCATTTGAATCACGAGAAATGGCTGAAAAATTAGCTGCTGCAATTGGAAGGATCTTACTGTTGGACCTTGTCATTAGAAATGAAGATAGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCGGCAAATTTGCTCTTGGCTGATAGAATGACATCTGCAAATATGAATGCATTTGAGGAAGCCTTTGATTCTGCTATTATGCGATACAAACCAAAAGTCATTACAACGCTTCAAAAAGAAAGAAGGGCAACTTCAGTGGATAATAGATCGAGTTCTAATTCAGGGTTGGTTTCAGAGGTGTCTGAACTTTGTGATATTGTTGAATCCCCAAAATCTAGTAACCGAAGTATAAAAAGTCAAATATCAGATGAAGCATTGCCTTGTGATTTTAATATTGTGGCTATTGACTCTGGTGTTCCTCGTCGACCTCCTGCTGGAAAACGTGCTAATGATCAATCAATTTACCCAAAATTAGTCGAGTTGCTACTTAACAGTTCTGAGTTCTCCTCTAATCTGCTGCATGACATTACAGGAGGGAAATTAGGGTTCCCTTCATCAACTGATGCCAACTCAACTTGTGGCATGCAGCTTACAGATATGAGTTCTATTGTCCATGAATTTCGATATGGGTTTCGTGCTGCTCTTAGAGACTTGCAAGGATTTCACATATTTTTGCTTACCCTTCACCAAAAGTTAGACAACTCATTACGAGCGTTCATGAGTATCATAAATAAATTTCCCTTGGGGGAATCTGACAAAGAGGATGCAGGGATTCCTGAGTCCCATTTGCAGGGTTCTACCACTACTCATTGTTTATCTCCACGTGGTAAGGAACGAGCCTCTAGTGATGGTAATATAGATGTTACAGAGTCAGCTCTAAGATCATCATCGTCAGGAAACAAAGAAAGCTCAGACTTATCTTCTCCCTTGTCACGAGATAGCTCACAAGGAAAGCTATACAAAGGAAGTGCAGAGCCCATTCATAGCCTTCGTTTGACTGCAAAGCTTCGAGACTTTCATAAATTTGCCAAAGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAGTGCTAAAGAATGAAGCTGTTAAACTCTGCCAGGAGAATAAATTTAATACTGGGTTTTTTGAGGGCAGCGATAGTCATGGAGTTGTTGATGCTTATGAATTGAAGGTGAGACTTGAGCACATTCTTGAAAGGATTGCACTAATATCTGAGGCTGCAAATACAGAAAGGCCTTCTTCAGTTACACCTGCCTTGTTTATAGGCGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAGTTACTCATATTTTATGTCTCTGCTCAAATGAAATTGGGCAGTCAGATTCTCAGTTTCCTGATCTATTTGAATACAAAAATTTTTCAATAAGTGATGATGAAGACTCAAACATCAGCAGCATCTTTGAAGAAGCTTCTGATTTTGTTGATGACGTTGAAAGAAAGAGTGGGAAGGTCCTGGTTCATTGTTTTGAAGGGAAAAGCAGAAGTGCCACATTAGTTCTTGCTTACTTGATGCTCAGAAAGAAATACACACTGTTAAAAGCATGGAATGCCTTGAAACGGGTTCACCGGCGAGCTCAACCTAATGATGGGTTTGCCAAAACATTATTAGAGTTAGATCGAAGAATACATGGAAAGGTATCCATGGAGTGGCAATCACGAAAACCAACCATGAAAGTTTGCCCAATTTGTGGGAAAAATGCTGGACTGAGCAGTAGCTCACTGAAACTTCATTTGCAAAAATCACACAAGAAGCTATCATCTGGGAGTGTAGACAGCGCAATGACCATGGAAATACAGAAAGCATTGACAGCTCTGAGGATCAGTCGTGGAGGAAGCGTGAGCCCAACCCAAAGGCAATCTCTTCTCATCTTGGATGAATAG 3462 43.24 MVCKFVSVPTLEVGEMRMVRLFLEIQKDPYQNSVRTLSETERPGTLSRMESMKSAEVWQSEESGVLMVLASQVINRCRTYIAVGRVYITACRSSPFTLVGADGNRNRKGIACSAAPSSSSSSSSSSSSSSSSSSSDGQGMAIGNGIPNHQLYLLLLICLLFPFPFSNRERKRGLIPYTYASLRFTFLFKTLYKLQYYHSLPLNLSFCYGKTPSPSSSGAPFLPSLNSFHSLPLISSPLFYVMPEYQDIKDLDLDLGPDEPDLAPLPPTVTSRVLHMLGDIAAGPAYRFSQWLELVRKRSGKHRASAFHNRPHPPFDMPFGAEELVNESRTLPAPEQSTETNLWDRLAKASMLDIESSCFSWDRLLSLHRTEHSSSTEHSEDEMNKALEVTVNSGGVVFFALFNQLGYDDNVPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNSSTEWLQIKEAAEKARDIACLEGDEVGEMTCSELLEALEFSRCLFLMSYVHGSPLLESAFESREMAEKLAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLLADRMTSANMNAFEEAFDSAIMRYKPKVITTLQKERRATSVDNRSSSNSGLVSEVSELCDIVESPKSSNRSIKSQISDEALPCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGFPSSTDANSTCGMQLTDMSSIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMSIINKFPLGESDKEDAGIPESHLQGSTTTHCLSPRGKERASSDGNIDVTESALRSSSSGNKESSDLSSPLSRDSSQGKLYKGSAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTPALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDSNISSIFEEASDFVDDVERKSGKVLVHCFEGKSRSATLVLAYLMLRKKYTLLKAWNALKRVHRRAQPNDGFAKTLLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALRISRGGSVSPTQRQSLLILDE 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29570014 29583586 + ClG42_06g0193300.10 Clacu06g1933 252581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1933 1153 ProSitePatterns Tyrosine specific protein phosphatases active site. 1013 1023 IPR016130 GO:0016311(InterPro)
Clacu06g1933 1153 Gene3D Protein tyrosine phosphatase superfamily 904 1072 IPR029021 -
Clacu06g1933 1153 SUPERFAMILY Protein kinase-like (PK-like) 290 664 IPR011009 -
Clacu06g1933 1153 Pfam Dual specificity phosphatase, catalytic domain 938 1067 IPR000340 GO:0016311(InterPro)
Clacu06g1933 1153 MobiDBLite consensus disorder prediction 797 830 - -
Clacu06g1933 1153 ProSiteProfiles Dual specificity protein phosphatase domain profile. 926 1071 IPR020422 GO:0006470(InterPro)
Clacu06g1933 1153 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 926 1070 IPR029021 -
Clacu06g1933 1153 Gene3D - 509 635 IPR036940 -
Clacu06g1933 1153 MobiDBLite consensus disorder prediction 773 787 - -
Clacu06g1933 1153 Pfam Actin-fragmin kinase, catalytic 339 598 IPR015275 -
Clacu06g1933 1153 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 998 1047 IPR000387 GO:0016311(InterPro)
Clacu06g1933 1153 SMART dsp_5 926 1068 IPR020422 GO:0006470(InterPro)
Clacu06g1933 1153 CDD DSP 927 1064 - -
Clacu06g1933 1153 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 263 1152 IPR035010 GO:0004721(InterPro)|GO:0009737(InterPro)|GO:0043622(InterPro)
Clacu06g1933 1153 MobiDBLite consensus disorder prediction 765 833 - -
Clacu06g1933 1153 MobiDBLite consensus disorder prediction 112 139 - -
Clacu06g1933 1153 FunFam Dual specificity protein phosphatase PHS1 898 1072 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1933 K14165 - - csv:101220184 1625.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g32 . . . Bda15g00697 Bpe12g00460 . . . . . Cma10g00021 . Car10g00014 . Sed12g2546 . . Bhi02g00621 Tan09g2433 Cmetu02g0933 . Hepe09g0013 . . Cla06g01782 Cam06g1976 Cec06g2025 Cco06g2033 Clacu06g1933 Cmu06g1874 Cre06g2686 . . Cone13ag0255 . . . . . . . . . . . . Bma08g00279 . Cmo10g00018 . . . . . . Cpe18g00937 . . . . . . . . . . . . . . Lsi06g01680 Csa01g00011 Chy02g02701 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g0667 . 116 685 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Clacu01g1774 . 117 671 Protein tyrosine phosphatase (PTP) family AT3G50110 59.2 3.6e-177 618.6
Clacu10g1527 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Clacu06g1324 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Clacu09g1033 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.4e-122 436.4
Clacu06g1933 . 252 1147 Protein tyrosine phosphatase (PTP) family AT5G23720 65.2 0.0e+00 1089.3
Clacu06g0577 . 66 203 Protein tyrosine phosphatase (PTP) family AT3G06110 58.0 2.6e-42 168.7
Clacu09g2109 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Clacu05g2338 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.1 6.1e-116 414.1
Clacu07g0502 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 7.4e-98 354.0
Clacu10g1408 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 1.6e-203 705.7
Clacu02g1854 . 93 294 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Clacu09g1115 . 25 231 Protein tyrosine phosphatase (PTP) family AT2G32960 64.0 9.8e-73 270.4
Clacu03g1046 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.2e-55 210.7
Clacu10g0242 . 69 401 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 2.9e-101 365.5
Clacu11g0342 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Clacu11g0342 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Clacu10g0242 . 105 280 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 5.9e-43 171.0
Clacu02g1854 . 127 295 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Clacu09g1115 . 34 232 Protein tyrosine phosphatase (PTP) family AT4G03960 63.8 2.3e-69 258.8
Clacu03g1046 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Clacu03g1046 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 4.2e-79 291.2
Clacu02g1854 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Clacu07g0292 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.4e-63 239.2
Clacu10g1527 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Clacu02g0667 . 82 685 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 3.3e-220 761.5
Clacu01g1774 . 115 671 Protein tyrosine phosphatase (PTP) family AT3G19420 58.2 4.8e-187 651.4
Clacu02g0667 . 116 685 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Clacu01g1774 . 117 671 Protein tyrosine phosphatase (PTP) family AT3G50110 59.2 3.6e-177 618.6
Clacu06g1324 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Clacu02g2250 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 7.9e-70 260.8
Clacu10g0180 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 1.1e-110 396.7
Clacu04g0781 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.3e-286 982.2
Clacu04g0781 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 1.9e-258 888.6
Clacu04g0781 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 3.9e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009525 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 2 1 0 1 1 1 31