Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1942 ATGCAAAAAGTCCAAAAACCCTTGGAAGCCCAAAACGATAGGCGTGATCGACCTGACCCAAAAGAAACGAGCGCCCCGATTCCTTCGTCTAACCCCACGATCATGGCTTCAACATCTTCAATCGCTTCCTCCATCAACAGACCATTTCCTCTACATTCTTCACATCTTCCGATTTCTTCTATTTTCTTTCGATTTCATCAACCCGATCTCTTTTCCATTCTTCACCATATTTGCTTCGCCATTCTTGCTTTCCAAAAAATCAAGCACTATTACCCTCTATCAGTTGCTATTAGTTGCTGGTTTAGTGAAGAACCAATCAAAACTCCGTGCAAGGTGCAAAGGGTGGTGAAAATTAAAAAAGTGGATTCGAAGCGAGGGAAGAGGCCCCTTTGTTCCGATGAGTCGGAGGAAGAAAATCCGTTGCCGATCTACTCAGCTAGATCTGAACATGACATGTCAGCCATGGTTTGTGCGTTAGGTGAAGTGATAAGGAGTGGGAGTAGCAAAAGCCCAGCGGTAGTTGAAGCAGATTATTGGCCAGAATCGGAATCGCAATCGCAGCGAGCAGATCATGAAGAAGAAGTGAAAAGAGAGAGTCGGCATTATCGAGGAGTAAGACAGAGACCGTGGGGAAAATGGGCAGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGCTAGGCACCTTCGACACTGCTGAGGCTGCAGCACTTGCTTACGATGAAGCTGCCCTTAGATTCAAAGGCACAAAAGCCAAGCTCAACTTCCCTGAGAGGCTCACCACTCCACCCTCCTATGCCTATCATCATCCCACCTTTATGCTCAATCTCCACTCCTCAACTTCTCATCCTTCCCATCATCAGGACCACAAAAACTAA 882 46.49 MQKVQKPLEAQNDRRDRPDPKETSAPIPSSNPTIMASTSSIASSINRPFPLHSSHLPISSIFFRFHQPDLFSILHHICFAILAFQKIKHYYPLSVAISCWFSEEPIKTPCKVQRVVKIKKVDSKRGKRPLCSDESEEENPLPIYSARSEHDMSAMVCALGEVIRSGSSKSPAVVEADYWPESESQSQRADHEEEVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYAYHHPTFMLNLHSSTSHPSHHQDHKN 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29626365 29628178 + ClG42_06g0194200.10 Clacu06g1942 252590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1942 293 ProSiteProfiles AP2/ERF domain profile. 201 258 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1942 293 SMART rav1_2 201 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1942 293 MobiDBLite consensus disorder prediction 178 197 - -
Clacu06g1942 293 CDD AP2 201 259 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1942 293 PRINTS Ethylene responsive element binding protein signature 224 240 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1942 293 PRINTS Ethylene responsive element binding protein signature 202 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1942 293 Gene3D AP2/ERF domain 200 260 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1942 293 MobiDBLite consensus disorder prediction 1 34 - -
Clacu06g1942 293 MobiDBLite consensus disorder prediction 8 22 - -
Clacu06g1942 293 FunFam Ethylene-responsive transcription factor 2 200 259 - -
Clacu06g1942 293 PANTHER DNA-BINDING DOMAIN 167 276 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Clacu06g1942 293 Pfam AP2 domain 201 250 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1942 293 SUPERFAMILY DNA-binding domain 201 259 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0630 Clacu-Chr2:6183549 Clacu06g1942 Clacu-Chr6:29626365 1.10E-25 dispersed
Clacu05g1156 Clacu-Chr5:10637302 Clacu06g1942 Clacu-Chr6:29626365 1.50E-23 dispersed
Clacu06g1942 Clacu-Chr6:29626365 Clacu08g0858 Clacu-Chr8:18626154 7.10E-27 dispersed
Clacu06g1942 Clacu-Chr6:29626365 Clacu06g0166 Clacu-Chr6:1874034 4.00E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47967 PF00847 AP2 7.80E-15 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1942 - - - 0.0