Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1943 ATGAAAAGAATTGGAAAGGGACTAGCTGTTGAGGGTGCAGCAGCTCTCTTCCCACCCACCCCTTGCTCTTGTTTTCTTTCTCTCTGTGGCCTCTTGTCTCCTGAGTCCTGTGAGTTGAGATTTGCGACCCCAGAGGGTAGCAAGGGAAGGTCGGAAAAAGAGCGACAGGTTGAGTTGTTTGTAGTTGTGTACCCCTACGCATACACGCAAAACACTACCACTACCACTACCACTACACATCCAATTCGGGTAATGGATCCAGAAGCTCTCTCAGCCACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGCGGCAGCGGCGCACCCCTCCCAGCGCCACTGCCCCCCTACTCGCTGCGGCCCAGGGAGTTGGGATTGGGAGGCCTCGAGGACTTGTTTCAGGCTTACGGAATCAGGTACTACACCGCTGCTAAAATTGCGGAACTTGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTAGAGGATATGATGAACAGCCTCTCTCACATTTTTCGTTGGGACCTTCTGGTGGGTGAGAGGTACGGTATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTCTAGATGACGAGACCGATTCCTCCAGGCGCCGTCACCTCTTGTCCAATGACAACACAACCAACGTCGTCCTCGATGCCCTCTCTCAGGAAGGGCTGTCGGAAGAACCGGTGCAGCAGGAGAAGGAGGCGGTTGGAAGTGGAGGAGGAGGAGCGTGGGAGGCAGTTGCAGCCGCTGAGATCAGGAAGAAGCAGCGGAGGAAAAACGGATCAAAAAAGAAGCAGGTGATGGTGATGGAGGAGGATCACGATGAGAACGAGGGAGCTGGGGACGAGGAGGAGAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATAGTAACCGAGCCAGGGGAGGTTGCACGGGGAAAGAAGAACGGCCTCGACTATCTCTTTCACTTATATGAGCAGTGTCGTGAATTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGCCCCACTAAGGTGACGAACCAGGTGTTTAGATATGCAAAGAAGGCGGGAGCAAGTTACATAAACAAGCCCAAAATGAGACACTACGTGCACTGCTATGCCCTGCACTGTCTAGACGAGGAAGCGTCGAACGCATTGAGGAGCGTTTTCAAAGAGAGGGGCGAAAATGTGGGAGCCTGGCGACAGGCATGTTATAAGCCTCTGGTAGCCATAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTATGTGCCTACCAAACTCCGTCAACTCTGCCATGCCGAGCGCAACGGTTCCACAGCCTCCACCTCAGCCGCCGCACCTCACTTGCCTTTTTAG 1410 53.69 MKRIGKGLAVEGAAALFPPTPCSCFLSLCGLLSPESCELRFATPEGSKGRSEKERQVELFVVVYPYAYTQNTTTTTTTTHPIRVMDPEALSATLFKWDPRGMVGGGSGAPLPAPLPPYSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWDLLVGERYGIKAAVRAERRRLDDETDSSRRRHLLSNDNTTNVVLDALSQEGLSEEPVQQEKEAVGSGGGGAWEAVAAAEIRKKQRRKNGSKKKQVMVMEEDHDENEGAGDEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRSVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNGSTASTSAAAPHLPF 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29633994 29636572 - ClG42_06g0194300.10 Clacu06g1943 252591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1943 469 PANTHER PROTEIN LEAFY 85 463 IPR002910 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu06g1943 469 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 294 457 IPR035209 GO:0003677(InterPro)
Clacu06g1943 469 Gene3D Protein LEAFY 295 463 IPR038276 -
Clacu06g1943 469 MobiDBLite consensus disorder prediction 260 298 - -
Clacu06g1943 469 Pfam Floricaula / Leafy protein SAM domain 127 203 IPR035079 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47968 PF17538 C_LFY_FLO 3.00E-107 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1943 - - - 0.0