Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0056 ATGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCCTCCCCCACCCAAGGCAGAAGTGGTGGGTTGGCCACCAATAAGGTCATATAGGAAGAAGAGGTTGGGGGCTGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGGTTTGTGAAGGTTAGCCTTGAAGGTGCACCTTATCTTCGTAAGGTCGACTTGAACATGTTCAACAGCTACACTCAACTTTCCCATGCCTTGGCCAAATTCTTTGCTGCCTTCACCATTGGTAATTGTGGGATGAAAGACTTCATGAATGAAACCAAACTAATAGATCTATTGAATGGTTCTGATTATGTTCCAACCTATCAAGACAAAGATGGTGATTGGATGCTTCTTGGTGATGTTCCATGGCAGATGTTTGTTGAATCTTGCAAGCGTGTACGCATAATGAAAGGAAAGGAAGCCATTGGCCTTGCAAATGGTCTCGTCTTCTTCAAGGCTCCAGGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTGCTGTAATTAGTAGTATTCAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACGTAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCCCTGTTGAATCTGGGAAGGATGAAGAGCAAAATGGTTTTAATTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTAATGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATGACAATGATCGATCATCAGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTGCCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAACGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGTAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCTTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTTGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACGGTCGCATTTATTGGTAATGAAGGCTACATCCTACTAGTGTCAACCAAAACCAAGGAGCTCATTGGAACACTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCCGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAACGTGCATACACAAGGGTGTCGAGGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCATTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATCATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTGGGAAATGCTGCTGGAAAGGGGCAGACCGCAGACAGAGCTTCAGAGATGGCTGGAGATGGATTTGTAATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACAACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCAGCCCTGAAAGTGGTTCCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCGTATGCGCGATACAAAGGTCTCGTTGGATCTTGA 3537 42.27 MSFEETELRLGLPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSPPPPKAEVVGWPPIRSYRKKRLGAVQKGSKEEEISDEEKKVVKVRFVKVSLEGAPYLRKVDLNMFNSYTQLSHALAKFFAAFTIGNCGMKDFMNETKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWQMFVESCKRVRIMKGKEAIGLANGLVFFKAPGADWKMSLISQNVAVISSIQKVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKERKKEDEQQKEIKKLENFLFGSLYSPVESGKDEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDDNDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRTCIHKGVEEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKGQTADRASEMAGDGFVIPVESQVSSVKKKKKTTTTTTKKKNTAISTSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGSPESGSGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKGLVGS 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 921929 936283 + ClG42_07g0005600.10 Clacu07g0056 252654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0056 1178 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 1114 1165 IPR045863 -
Clacu07g0056 1178 Pfam Magnesium transporter MRS2-like 830 1105 - -
Clacu07g0056 1178 PANTHER WD-REPEAT PROTEIN-RELATED 263 770 IPR045161 GO:0006364(InterPro)|GO:0032040(PANTHER)|GO:0034388(PANTHER)
Clacu07g0056 1178 Gene3D - 96 210 - -
Clacu07g0056 1178 Coils Coil 981 1008 - -
Clacu07g0056 1178 CDD Mrs2_Mfm1p-like 818 1175 IPR039204 -
Clacu07g0056 1178 MobiDBLite consensus disorder prediction 261 280 - -
Clacu07g0056 1178 SUPERFAMILY CAD & PB1 domains 103 197 - -
Clacu07g0056 1178 Gene3D - 800 889 - -
Clacu07g0056 1178 MobiDBLite consensus disorder prediction 401 426 - -
Clacu07g0056 1178 Coils Coil 261 289 - -
Clacu07g0056 1178 Pfam AUX/IAA family 5 205 IPR033389 -
Clacu07g0056 1178 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 647 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 MobiDBLite consensus disorder prediction 1 25 - -
Clacu07g0056 1178 SUPERFAMILY WD40 repeat-like 479 769 IPR036322 GO:0005515(InterPro)
Clacu07g0056 1178 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 606 641 - -
Clacu07g0056 1178 MobiDBLite consensus disorder prediction 241 280 - -
Clacu07g0056 1178 Pfam WD domain, G-beta repeat 481 507 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 Pfam WD domain, G-beta repeat 603 638 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 Pfam WD domain, G-beta repeat 657 681 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 FunFam U3 small nucleolar RNA-associated protein 18 homolog 459 773 - -
Clacu07g0056 1178 Gene3D - 458 771 IPR015943 GO:0005515(InterPro)
Clacu07g0056 1178 SMART WD40_4 641 681 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 SMART WD40_4 468 508 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 SMART WD40_4 600 638 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 Gene3D Magnesium transport protein CorA, transmembrane region 893 1108 - -
Clacu07g0056 1178 MobiDBLite consensus disorder prediction 241 260 - -
Clacu07g0056 1178 FunFam Magnesium transporter MRS2-1 805 889 - -
Clacu07g0056 1178 FunFam Auxin-responsive protein 96 208 - -
Clacu07g0056 1178 ProSiteProfiles PB1 domain profile. 101 198 IPR053793 -
Clacu07g0056 1178 MobiDBLite consensus disorder prediction 906 929 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1836 Clacu-Chr5:27620037 Clacu07g0056 Clacu-Chr7:921929 3.70E-22 dispersed
Clacu07g0056 Clacu-Chr7:921929 Clacu09g0745 Clacu-Chr9:6613285 1.90E-54 dispersed
Clacu02g0026 Clacu-Chr2:304551 Clacu07g0056 Clacu-Chr7:921929 5.10E-73 transposed
Clacu02g0739 Clacu-Chr2:7807272 Clacu07g0056 Clacu-Chr7:921929 7.60E-74 transposed
Clacu02g1265 Clacu-Chr2:25262248 Clacu07g0056 Clacu-Chr7:921929 1.20E-277 transposed
Clacu05g1105 Clacu-Chr5:9982023 Clacu07g0056 Clacu-Chr7:921929 3.50E-34 transposed
Clacu06g0654 Clacu-Chr6:7554218 Clacu07g0056 Clacu-Chr7:921929 2.80E-148 transposed
Clacu08g1201 Clacu-Chr8:21944714 Clacu07g0056 Clacu-Chr7:921929 9.10E-67 transposed
Clacu10g1283 Clacu-Chr10:25696533 Clacu07g0056 Clacu-Chr7:921929 3.00E-85 transposed
Clacu02g1706 Clacu-Chr2:30544325 Clacu07g0056 Clacu-Chr7:921929 7.80E-34 wgd
Clacu05g0532 Clacu-Chr5:4403140 Clacu07g0056 Clacu-Chr7:921929 1.50E-48 wgd
Clacu06g0650 Clacu-Chr6:7485246 Clacu07g0056 Clacu-Chr7:921929 1.60E-37 wgd
Clacu07g0056 Clacu-Chr7:921929 Clacu09g0744 Clacu-Chr9:6580137 6.50E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47971 PF02309 AUX_IAA 2.10E-66 CL0072 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0056 K14553 - csv:101208908 932.939