Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0056 ATGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCCTCCCCCACCCAAGGCAGAAGTGGTGGGTTGGCCACCAATAAGGTCATATAGGAAGAAGAGGTTGGGGGCTGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGGTTTGTGAAGGTTAGCCTTGAAGGTGCACCTTATCTTCGTAAGGTCGACTTGAACATGTTCAACAGCTACACTCAACTTTCCCATGCCTTGGCCAAATTCTTTGCTGCCTTCACCATTGGTAATTGTGGGATGAAAGACTTCATGAATGAAACCAAACTAATAGATCTATTGAATGGTTCTGATTATGTTCCAACCTATCAAGACAAAGATGGTGATTGGATGCTTCTTGGTGATGTTCCATGGCAGATGTTTGTTGAATCTTGCAAGCGTGTACGCATAATGAAAGGAAAGGAAGCCATTGGCCTTGCAAATGGTCTCGTCTTCTTCAAGGCTCCAGGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTGCTGTAATTAGTAGTATTCAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACGTAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCCCTGTTGAATCTGGGAAGGATGAAGAGCAAAATGGTTTTAATTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTAATGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATGACAATGATCGATCATCAGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTGCCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAACGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGTAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCTTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTTGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACGGTCGCATTTATTGGTAATGAAGGCTACATCCTACTAGTGTCAACCAAAACCAAGGAGCTCATTGGAACACTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCCGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAACGTGCATACACAAGGGTGTCGAGGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCATTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATCATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTGGGAAATGCTGCTGGAAAGGGGCAGACCGCAGACAGAGCTTCAGAGATGGCTGGAGATGGATTTGTAATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACAACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCAGCCCTGAAAGTGGTTCCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCGTATGCGCGATACAAAGGTCTCGTTGGATCTTGA 3537 42.27 MSFEETELRLGLPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSPPPPKAEVVGWPPIRSYRKKRLGAVQKGSKEEEISDEEKKVVKVRFVKVSLEGAPYLRKVDLNMFNSYTQLSHALAKFFAAFTIGNCGMKDFMNETKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWQMFVESCKRVRIMKGKEAIGLANGLVFFKAPGADWKMSLISQNVAVISSIQKVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKERKKEDEQQKEIKKLENFLFGSLYSPVESGKDEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDDNDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRTCIHKGVEEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKGQTADRASEMAGDGFVIPVESQVSSVKKKKKTTTTTTKKKNTAISTSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGSPESGSGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKGLVGS 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 921929 936283 + ClG42_07g0005600.10 Clacu07g0056 252654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0056 1178 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 1114 1165 IPR045863 -
Clacu07g0056 1178 Pfam Magnesium transporter MRS2-like 830 1105 - -
Clacu07g0056 1178 PANTHER WD-REPEAT PROTEIN-RELATED 263 770 IPR045161 GO:0006364(InterPro)|GO:0032040(PANTHER)|GO:0034388(PANTHER)
Clacu07g0056 1178 Gene3D - 96 210 - -
Clacu07g0056 1178 Coils Coil 981 1008 - -
Clacu07g0056 1178 CDD Mrs2_Mfm1p-like 818 1175 IPR039204 -
Clacu07g0056 1178 MobiDBLite consensus disorder prediction 261 280 - -
Clacu07g0056 1178 SUPERFAMILY CAD & PB1 domains 103 197 - -
Clacu07g0056 1178 Gene3D - 800 889 - -
Clacu07g0056 1178 MobiDBLite consensus disorder prediction 401 426 - -
Clacu07g0056 1178 Coils Coil 261 289 - -
Clacu07g0056 1178 Pfam AUX/IAA family 5 205 IPR033389 -
Clacu07g0056 1178 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 647 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 MobiDBLite consensus disorder prediction 1 25 - -
Clacu07g0056 1178 SUPERFAMILY WD40 repeat-like 479 769 IPR036322 GO:0005515(InterPro)
Clacu07g0056 1178 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 606 641 - -
Clacu07g0056 1178 MobiDBLite consensus disorder prediction 241 280 - -
Clacu07g0056 1178 Pfam WD domain, G-beta repeat 481 507 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 Pfam WD domain, G-beta repeat 603 638 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 Pfam WD domain, G-beta repeat 657 681 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 FunFam U3 small nucleolar RNA-associated protein 18 homolog 459 773 - -
Clacu07g0056 1178 Gene3D - 458 771 IPR015943 GO:0005515(InterPro)
Clacu07g0056 1178 SMART WD40_4 641 681 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 SMART WD40_4 468 508 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 SMART WD40_4 600 638 IPR001680 GO:0005515(InterPro)
Clacu07g0056 1178 Gene3D Magnesium transport protein CorA, transmembrane region 893 1108 - -
Clacu07g0056 1178 MobiDBLite consensus disorder prediction 241 260 - -
Clacu07g0056 1178 FunFam Magnesium transporter MRS2-1 805 889 - -
Clacu07g0056 1178 FunFam Auxin-responsive protein 96 208 - -
Clacu07g0056 1178 ProSiteProfiles PB1 domain profile. 101 198 IPR053793 -
Clacu07g0056 1178 MobiDBLite consensus disorder prediction 906 929 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0056 K14553 - - csv:101208908 932.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1836 Clacu-Chr5:27620037 Clacu07g0056 Clacu-Chr7:921929 3.70E-22 dispersed
Clacu07g0056 Clacu-Chr7:921929 Clacu09g0745 Clacu-Chr9:6613285 1.90E-54 dispersed
Clacu02g0026 Clacu-Chr2:304551 Clacu07g0056 Clacu-Chr7:921929 5.10E-73 transposed
Clacu02g0739 Clacu-Chr2:7807272 Clacu07g0056 Clacu-Chr7:921929 7.60E-74 transposed
Clacu02g1265 Clacu-Chr2:25262248 Clacu07g0056 Clacu-Chr7:921929 1.20E-277 transposed
Clacu05g1105 Clacu-Chr5:9982023 Clacu07g0056 Clacu-Chr7:921929 3.50E-34 transposed
Clacu06g0654 Clacu-Chr6:7554218 Clacu07g0056 Clacu-Chr7:921929 2.80E-148 transposed
Clacu08g1201 Clacu-Chr8:21944714 Clacu07g0056 Clacu-Chr7:921929 9.10E-67 transposed
Clacu10g1283 Clacu-Chr10:25696533 Clacu07g0056 Clacu-Chr7:921929 3.00E-85 transposed
Clacu02g1706 Clacu-Chr2:30544325 Clacu07g0056 Clacu-Chr7:921929 7.80E-34 wgd
Clacu05g0532 Clacu-Chr5:4403140 Clacu07g0056 Clacu-Chr7:921929 1.50E-48 wgd
Clacu06g0650 Clacu-Chr6:7485246 Clacu07g0056 Clacu-Chr7:921929 1.60E-37 wgd
Clacu07g0056 Clacu-Chr7:921929 Clacu09g0744 Clacu-Chr9:6580137 6.50E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g1283 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Clacu08g1201 . 6 380 MRS2 Gene Family AT1G16010 52.4 2.1e-107 386.3
Clacu06g0654 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.6e-156 549.3
Clacu07g0056 . 780 1151 MRS2 Gene Family AT5G64560 69.2 6.2e-132 467.6
Clacu02g0739 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Clacu02g0026 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.2e-116 415.2
Clacu05g1105 . 1 177 MRS2 Gene Family AT3G58970 71.3 8.3e-64 241.5
Clacu08g1201 . 6 380 MRS2 Gene Family AT2G03620 68.4 4.1e-137 485.0
Clacu10g1283 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Clacu06g0654 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.0e-127 453.4
Clacu07g0056 . 780 1113 MRS2 Gene Family AT5G09690 64.2 1.1e-108 390.2
Clacu10g1283 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Clacu06g0654 . 23 281 MRS2 Gene Family AT5G09720 69.1 7.2e-88 320.9
Clacu07g0056 . 815 1073 MRS2 Gene Family AT5G09720 62.0 2.2e-76 282.7
Clacu10g1283 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Clacu08g1201 . 6 380 MRS2 Gene Family AT1G80900 54.2 4.0e-106 382.1
Clacu01g1466 . 16 424 MRS2 Gene Family AT5G22830 68.4 8.5e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002983 1 10 1 1 1 1 2 2 2 1 2 2 2 1 0 2 2 2 2 2 1 1 0 2 0 2 1 1 1 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47971 PF02309 AUX_IAA 2.10E-66 CL0072 Clacu TR