Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0057 ATGAACAAATGTTCGACAAGACATGCAGAGTTGAGGTACGTAGTTGAAGTTTTTGATTCTTTTTGGGGTATGGCGAATCGGGTTGTTAAAGTGAAGAGGGAAGCCATTGCAGCATGCATAACTTGCCCACTTTGTAATAAGCTCTTGAAAGAAGCAACCACCATTTCTGAATGTCTTCATACTTTTTGCAGAAAGTGCATATCCGATAAGATTTCTGATGAGGAACTAGAAAACTGTCCAGTATGTAATATTGACCTCGGGTGTGTCCCACTGGAGAAATTAAGGCCAGACCACAATCTAGAAGATTTAAGGGCCAAGATTTTCCCTAGTAAAAGGAGAAAATTCAAGACGCCGGAAGTTGTTCCTGTTATTCTACCACCAGTTAGAAGAAAGGAAAGATCACTTTCCTCATTGGTGGTCAATAGTCCAAGAGTGTCAAGTCATGCTACCGCAACTGGAAGAAGAACAGCAGCTGCTGCTGCAAGAATTGGTTCTATTTTACGAACACCAAGAGTCTCTTCTGAGAAGCGAGTGAAGAAAGAGGATGATTCCATGGACGACGGTTCAGAGAGCTCAAGTTCTCTTGAGACATCAGACAAATTCAATCAGAATAAAAGGCCGGATTCCAGTCCTACCAAGTCGACCATACCTTTGCGCAATAAAGAAGCCGAAAATGGTATTAACTCAATGGAAGGGAACTTGGATATCTGGAAACCTCTAAATTTCTTAGTTGAGGTTGCAAATAGGAGTAAATGTTCCAAATCTAATTCGCAAGGATTTGAAACTAAAGTCGAGCCTGGAGAAGTCGATGGAAGTGAAGCTCAGGCCAGCAAATCTAGAAATAGGGAAGGCAAACGCAAGCAAAAACGTGAGAATGGAAAAACTAGAGCAGACCCAGTATCTCCAGAAACTGAAAAACCTAAGAAACTGCGTAGGGTCCGCCAGAAAAGGGAATCTTTTTATGGGGACTCCAGCCTTACACCTCAGGTTGTGTTGGATGCCTCTAGTGCTCGGCATGAAAGAAAAGCTGGTCCGATTTGGCTCTCACTCATAGCCTCTGATCAGGAAGGAGATGTATCGTTGCCACAAATTCCCGCTAAGTATTTGAGAATAAAGGATAGAAACTTGCCAGTATCATTTGTCCAGAAGTACCTTATGAGAAAGCTGGATCTCCCAAGTGAATCAGAGGTTGAAGTCAAGTGTATGGGACATCCAGTAGTTCCCACTCTGGATTTGCATAGTTTAGTTGATTTGTGGCTACAAACAGCATCAACCTCCGAAAAGATCCCGGCATCGATCGGCTCATCGGCGGAGGATTTCATTATGGTTCTCTACTATGCTAGAAAGATCACAGTTTCTTGA 1362 42.8 MNKCSTRHAELRYVVEVFDSFWGMANRVVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCISDKISDEELENCPVCNIDLGCVPLEKLRPDHNLEDLRAKIFPSKRRKFKTPEVVPVILPPVRRKERSLSSLVVNSPRVSSHATATGRRTAAAAARIGSILRTPRVSSEKRVKKEDDSMDDGSESSSSLETSDKFNQNKRPDSSPTKSTIPLRNKEAENGINSMEGNLDIWKPLNFLVEVANRSKCSKSNSQGFETKVEPGEVDGSEAQASKSRNREGKRKQKRENGKTRADPVSPETEKPKKLRRVRQKRESFYGDSSLTPQVVLDASSARHERKAGPIWLSLIASDQEGDVSLPQIPAKYLRIKDRNLPVSFVQKYLMRKLDLPSESEVEVKCMGHPVVPTLDLHSLVDLWLQTASTSEKIPASIGSSAEDFIMVLYYARKITVS 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 940931 944941 + ClG42_07g0005700.10 Clacu07g0057 252655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0057 453 MobiDBLite consensus disorder prediction 190 220 - -
Clacu07g0057 453 SUPERFAMILY RING/U-box 38 107 - -
Clacu07g0057 453 Gene3D - 327 432 - -
Clacu07g0057 453 ProSiteProfiles Zinc finger RING-type profile. 42 83 IPR001841 -
Clacu07g0057 453 CDD RING-HC_PCGF 40 83 - -
Clacu07g0057 453 MobiDBLite consensus disorder prediction 251 318 - -
Clacu07g0057 453 Pfam Zinc finger, C3HC4 type (RING finger) 42 82 - -
Clacu07g0057 453 MobiDBLite consensus disorder prediction 275 309 - -
Clacu07g0057 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 133 IPR013083 -
Clacu07g0057 453 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 27 449 IPR044807 GO:0004842(InterPro)
Clacu07g0057 453 MobiDBLite consensus disorder prediction 172 187 - -
Clacu07g0057 453 SMART ring_2 42 82 IPR001841 -
Clacu07g0057 453 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Clacu07g0057 453 MobiDBLite consensus disorder prediction 170 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0057 Clacu-Chr7:940931 Clacu07g1182 Clacu-Chr7:26615910 1.30E-14 dispersed
Clacu02g1715 Clacu-Chr2:30624513 Clacu07g0057 Clacu-Chr7:940931 9.90E-113 wgd
Clacu05g0531 Clacu-Chr5:4394183 Clacu07g0057 Clacu-Chr7:940931 1.00E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0057 K16277 - csv:101220692 763.066