Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0061 ATGGAAGAGGTTGAAGAAGCTAACAAATCAGCCATAGAGAGCTGCCATGGAGTTTTGAATCTTTTAGTTCAACCTCCTCAAGACCAACTTCATTTCAGGAATCTAATGGTTGAAACTAAAGAAGCTGTTTTCAAGTTCAAGAAAGTTATTTCTCTCTTAAATTCTGGTTTTGGTCATGCCAGAGTTAGAAAATTCAACAAGATTCCTCTCCCTTTGCCTCAAAAATCCCTCTTAGATTCCCCAAATTACACTCCACATCCTCCAAACAAAAATCTTTACCCTTTTCACTCTGGTTTGAATGGTAAAGTTTCAATTTTTTTGGGAAACCCAGATTTACAATTGAGTCCAAATGACAAGAATTCCCTCCAAATTCCCAAAAAATCTCCATCTTTAAACTTCAGCTTCCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAGAGGATTTTGGCTCATCAGAAACAAATGAAACAGCAAGCAGAAATGATGTTTCTAAGGAATAACAGTGGGATGAACCTGAATTTTGACACATCTAATTGCACATTGACAATGTCATCAGCTAGATCTTTCATTTCTTCATTGAGTATGGATGGCAGCGTCGCCGACGGAAGCTCGTTCCATTTGATCGGACCGTCGTCAACGACAACGACGTCGGCCGATAACAAGAGGAAGTTTTCTGCAAGAGGAGATGAAGGAAGCTTGAAATGTGGAAGTTCTGGCAAATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATCAAGGTACCTGCCATAAGTAACAAACTTGCAGATATCCCTTCTGATGATTATTCATGGAGAAAGTATGGGCAGAAGCCAATTAAGGGCTCTCCTCATCCCAGGGGTTACTACAAATGCAGCAGCATGAGAGGTTGTCCGGCGAGAAAGCATGTTGAGCGGTGCTTAGAAGACCCGTCGATGCTTATTGTAACGTATGAAGGAGAGCATAATCACCCGAAAATGTCGACGCAATCTGCACACACTTAG 1026 41.91 MEEVEEANKSAIESCHGVLNLLVQPPQDQLHFRNLMVETKEAVFKFKKVISLLNSGFGHARVRKFNKIPLPLPQKSLLDSPNYTPHPPNKNLYPFHSGLNGKVSIFLGNPDLQLSPNDKNSLQIPKKSPSLNFSFPQQQQQQQQQQQQQQQRILAHQKQMKQQAEMMFLRNNSGMNLNFDTSNCTLTMSSARSFISSLSMDGSVADGSSFHLIGPSSTTTTSADNKRKFSARGDEGSLKCGSSGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKMSTQSAHT 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 970766 972479 + ClG42_07g0006100.10 Clacu07g0061 252659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0061 341 SMART WRKY_cls 273 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0061 341 FunFam WRKY transcription factor 65 257 334 - -
Clacu07g0061 341 MobiDBLite consensus disorder prediction 212 226 - -
Clacu07g0061 341 MobiDBLite consensus disorder prediction 116 158 - -
Clacu07g0061 341 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 337 IPR044810 GO:0003700(InterPro)
Clacu07g0061 341 Pfam Plant zinc cluster domain 233 271 IPR018872 -
Clacu07g0061 341 Gene3D WRKY domain 257 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0061 341 ProSiteProfiles WRKY domain profile. 268 334 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0061 341 MobiDBLite consensus disorder prediction 212 234 - -
Clacu07g0061 341 SUPERFAMILY WRKY DNA-binding domain 271 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0061 341 Pfam WRKY DNA -binding domain 275 332 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1480 Clacu-Chr6:25749442 Clacu07g0061 Clacu-Chr7:970766 3.40E-39 dispersed
Clacu07g0061 Clacu-Chr7:970766 Clacu07g0252 Clacu-Chr7:2882343 5.50E-23 dispersed
Clacu07g0061 Clacu-Chr7:970766 Clacu09g0752 Clacu-Chr9:6696295 3.30E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47972 PF03106 WRKY 1.20E-26 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0061 - - - 0.0