Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0083 ATGGCTTCTTCTTCTTCCTCTTCCTCTGCAAATACTAGTGTGTCAGGCAGTGGCGGTGGCGGTGGCAGTGGCTCGCCTTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATTTTTGCTCCTTACTTTTGCTCAGAGCAAGGGGCTGCAAGATTTGCTGCCATTCATAAAGTGTTTGGTGCAAGTAATGTTTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCATGATCCTGTTTATGGATGTGTTGCTCATATTTTTGCGCTCCAACAACAGGTGGCATATTTACAAACACAGCTAATGCAAGCCAAGGCTCAACTTGCACAAACCCTGATGGATTCAGGAGGTAATATGGAGATTCAATGGACAGGCAATTTCAATAACAATCTCTTCAATGGAATTCCAAATAATTATCAAACTCAGATTATGAACAACCCAGCAGTTTCCCCTCAGAGTTCTTTAGAATCAGCTGCCAACAATGATGAAGCTTTATTATTCATAAATAATCAAAATCACCTTCATGAAAGCCAAAGCAGATCACCAGAAGAATCTCAATTTCTTCAACCATTTCCTAGAAAAAAATTGCCTTCTTCTCATGCTGATCTTGGGGAACTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAA 708 40.82 MASSSSSSSANTSVSGSGGGGGSGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMQAKAQLAQTLMDSGGNMEIQWTGNFNNNLFNGIPNNYQTQIMNNPAVSPQSSLESAANNDEALLFINNQNHLHESQSRSPEESQFLQPFPRKKLPSSHADLGELQALALRMMRN 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1242345 1243745 + ClG42_07g0008300.10 Clacu07g0083 252681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0083 235 PANTHER LOB DOMAIN CONTAINING PROTEIN 22 198 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Clacu07g0083 235 MobiDBLite consensus disorder prediction 193 219 - -
Clacu07g0083 235 MobiDBLite consensus disorder prediction 1 20 - -
Clacu07g0083 235 Pfam Lateral organ boundaries (LOB) domain 26 124 IPR004883 -
Clacu07g0083 235 ProSiteProfiles LOB domain profile. 25 127 IPR004883 -
Clacu07g0083 235 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0254 Clacu-Chr5:2205438 Clacu07g0083 Clacu-Chr7:1242345 1.90E-39 dispersed
Clacu06g0035 Clacu-Chr6:567627 Clacu07g0083 Clacu-Chr7:1242345 7.50E-43 dispersed
Clacu07g0083 Clacu-Chr7:1242345 Clacu09g0797 Clacu-Chr9:7180340 1.40E-38 dispersed
Clacu07g0083 Clacu-Chr7:1242345 Clacu07g0084 Clacu-Chr7:1254424 2.00E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47976 PF03195 LOB 2.70E-36 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0083 K13944 - csv:101214521 367.851