Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0084 ATGACGGGCTCAGGTTCTCCTTGTGGAGCTTGTAAATTCTTGAGAAGAAAATGTGTTAGAGGATGTGTTTTTGCACCATATTTTTGCCATGAACAAGGAGCTACTCATTTTGCTGCCATTCATAAAGTGTTTGGAGCTAGTAATGTTTCTAAGCTTCTTGCTCGTCTTCCTATTAGTGAAAGATGTGAGGCTGCTGTTACTATTTCTTATGAGGCTCAAGCTAGGCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTTGTGAGTCTTCAAGCACAACTTGCTTCTTTGAAGGAACAAGCAGCGGAAAGCATTATGAATGCATCTGGTAACGGGGGCGGAGTGAATGAAAAGATTAATAATAGAAAGGTTCCTTCTCATCCCCAAGATCTCCATAGTTGGTTTCAATCGGAGCAACCAAACGTAACACTCGAGTTCAATCCGAATCCAACTCCGAATAATAATTCAGCATCAAACCCTTATTATGATGAGAATTATTGCATTATGGTTAATTCACAATCCAATGGGAACTATGAACATCACATGACTAAAATGGAGGAAAGTGGATCATATGGGAGCTATGAAGAAACCTCAGGCTATTCCATGTACACTCTTGATCAATTGCATTCAAATGTTCAACAATGGAGCTTCAATAAGTCTGCTGATGATTTACAATCTGTTGCTTTTGGCAATAGACATTGGTGA 726 39.67 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPISERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESIMNASGNGGGVNEKINNRKVPSHPQDLHSWFQSEQPNVTLEFNPNPTPNNNSASNPYYDENYCIMVNSQSNGNYEHHMTKMEESGSYGSYEETSGYSMYTLDQLHSNVQQWSFNKSADDLQSVAFGNRHW 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1254424 1255652 - ClG42_07g0008400.10 Clacu07g0084 252682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0084 241 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Clacu07g0084 241 Coils Coil 87 114 - -
Clacu07g0084 241 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 235 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Clacu07g0084 241 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0036 Clacu-Chr6:585369 Clacu07g0084 Clacu-Chr7:1254424 1.00E-33 dispersed
Clacu07g0084 Clacu-Chr7:1254424 Clacu09g0797 Clacu-Chr9:7180340 2.00E-43 dispersed
Clacu07g0083 Clacu-Chr7:1242345 Clacu07g0084 Clacu-Chr7:1254424 2.00E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47977 PF03195 LOB 1.00E-35 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0084 K13945 - csv:101214764 422.165