Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0091 ATGGAATCCTCTTATTTTTCGTTTTCCGATTCGGATTTCTCGACGGAATCTTCATTCGGATCAGCGGAATCATCGTTCTCATGGAGTGAGTTTTTCTCGATTCACAGTACCCTAGAAAACTCAATCTCACTACACGGAGAATTTCTCGGGAATCAAACATCGGAATCGGAATCGAAAATTGTAGTGAAGGAAGAAACCGAAGTGAGTTCGATTGATTTCGAGGAGGAGAAAGAAAGGAAGACAACGGAGAAGAGTTACAGAGGAGTGAGACGGCGGCCGTGGGGGAAATACGCGGCGGAGATTAGGGATTCGACGAGACATGGAGTTAGGGTTTGGCTTGGAACTTTTGATAGCGCTGAAGCTGCGGCTTTAGCTTATGATCAAGCGGCATTTTCGATGAGAGGAGCAATGGCGGTGCTGAATTTTCCGGTGGAAATGGTGAGGGAATCACTGAAGGATATTAAGTATCAACTGGAAGAAGGATGTTCGCCGGTGGTGGCTTTGAAGAGGAAACACTCAATGAGAAGGAAATCGGCGGCGGCGGCGGTGAAAAGCCAAGGGGCGGCGGAGAAGAAGAAGATGAAGAAAAACAACAATGTGGTGATTTTAGAAGATTTGGGAACAGAGTATTTGGAGGAACTTTTGATGCTAAGTTCATGA 660 46.06 MESSYFSFSDSDFSTESSFGSAESSFSWSEFFSIHSTLENSISLHGEFLGNQTSESESKIVVKEETEVSSIDFEEEKERKTTEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAMAVLNFPVEMVRESLKDIKYQLEEGCSPVVALKRKHSMRRKSAAAAVKSQGAAEKKKMKKNNNVVILEDLGTEYLEELLMLSS 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1322399 1323058 + ClG42_07g0009100.10 Clacu07g0091 252689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0091 219 MobiDBLite consensus disorder prediction 1 21 - -
Clacu07g0091 219 Pfam AP2 domain 85 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0091 219 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0091 219 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0091 219 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0091 219 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0091 219 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Clacu07g0091 219 SUPERFAMILY DNA-binding domain 85 145 IPR016177 GO:0003677(InterPro)
Clacu07g0091 219 CDD AP2 86 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0091 219 PANTHER DNA-BINDING DOMAIN 49 193 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Clacu07g0091 219 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0692 Clacu-Chr6:7996865 Clacu07g0091 Clacu-Chr7:1322399 1.40E-41 dispersed
Clacu07g0091 Clacu-Chr7:1322399 Clacu09g0767 Clacu-Chr9:6867740 1.30E-41 dispersed
Clacu05g0487 Clacu-Chr5:4045675 Clacu07g0091 Clacu-Chr7:1322399 1.20E-42 wgd
Clacu06g0689 Clacu-Chr6:7957702 Clacu07g0091 Clacu-Chr7:1322399 2.50E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47978 PF00847 AP2 1.20E-14 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0091 K14516 - csv:101220325 295.819