Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0114 ATGCATGCCACGTGGCAAAAGTTATGGGTATTGCTGTTTCTGGATTTTGCCTTCCCTCGCTCTTCTTTTACTTTTGGGAAATTAAAAGATTTTTGGCTGCAGTCAAACAATATGAAGAGTGACGTTAAGATTAAAAGGGGGAGGAGCGCTGGAAAAAGGGAGAATATTAGGAAGATAATGAAGTGTTTATGTTCTGGAGAGAAAACAGCTGGGGATGATATGATTCCTGCAGCGGAATCGCCTTCTGCTTTCGAGAATTCAGGAAGTGGACGCTCTTCACGGACTGGGGAGATCGTCAAGAAGCCAGAAATTGGCAATATAGAAGAAGCTGAGTCTTCGCTTCGTGAGAGTGGTTGCTTAAATTATGAGGAAGCAAGAGCATTGCTAGGAAGATATGAATATCAAAAAGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATCACTGCTATAACTAGTAAGATAATGATCTCCATAGCTAGAAGAGGAGACCGTCCACAGAGACAATCACAGAATTTTACTGCCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGCCATCCTTCTGAAAGCAAAATCATTGCAAGGCCTTGGGAGGTTCGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAGGCCGTGGAGCTGCTACCAGAGTTATGGAAGCTAGCTGATGCTTCTCAAGAAGCGATCCTTTCATACCGGCGAGCACTTCTTCATCAGTGGAACCTTGATGCAGGAACCACTGCTCGAATCCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGATGTGAAGCTTGCCCTCCGAATCTCCGGTCCCAAATGGACAGCTCATTTGTACCAAAAAACAATATTGAAGAAGCTATACTCTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAGAGGATTGATTGGGATCCATCAATCTTGGATCATCTCTCCTTTGCTCTAACAATATCAGGGGATACAAGGGATTTAGCAGGTCAAATAGAGGAATTGCCTCCTGGGATTCTACATCGACAAGAAAGGTATCATGCTCTAGCTCTGTGTTACTATGGAGAGGGTGAAAACTTGACTGCTTTGAATCTGTTGAGGAAAGTGTTGGGTAATCATGAGGATCCTAAATCGATTCCTGCTTTATTGATGGCGTCGAAGATTTGTGGAGAGAACTGCGACCTTGCTGAAGAGGGAACGAGTTTTGCTCATAGAGCTCTTCAAAACTTGGATCATGGATGTGATCAATTGGAAGGTGTTGCCAATTGTTTGTTGGGTGTCTCACTGTCTGTATATTCTAAATCTGCCACTGCAGATTCCGAGAAGTCCACCAGACAATCTGAGGCAATTGAGGCCTTGGAAGCCGCACGGAAGACAACTAGAACAGCTGACCCTAATGTCCTCTATCATTTGAGTCTTGAATATGCTGACGAGAGGAAGTTAGATTCAGCACTTTATTATGCAAAGAAGTGTCTCAAGCTGGAAGGTGGATCTAATGTTAAAACTTGGTTACTACTGGCTAGAATTCTCTCTGCCCAAAAACGATTTACAGATAGCGAAAGTATTATAAATGCAGCTCTAGATCAGACAGGGAAATGGGAGCAAGCCGAGTTGCTTCAAACGAAAGCAAAGCTTCTAATTGCACAGGATGAGTTTAAAGGTGCTATTGAGACTTATAGTCAATTACTCGCTGTTTTTCAAGTTCAGAGTAAAAATTTCAGTTTGGGAGATAAGAAGCTACATAAGAGCAGCAGAAATCATGCTAGAAGATTGCAATTGGAAGTGTGGCATGATCTAGCTGTAGTCTACATAAGGCTCTCACAATGGCACGATGCCGAGGCCTGCCTTTCAAAGTCGAAGGCCATCTCTTCTCATTCGGCACCTAGATGCCACATTACAGGTATGCTTTATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGCTTTTATGGCTTCTCTGGACATTGATCCCGTTCATGTCCCGAGCTTGGTCTCATCTGCGGTGGTTATCAGACATCTTGGCCACCAATCGCATCCTGTCATTCGCAGCTTTTTGATGGATGCTCTACGGCTCGATCAAACGAACCATGCTGCGTGGTACAATCTTGGGCTATTCTACAAGTCTGAAGGAACCAAGTCTTCATTAGCAGAAGCTGTTGAATGTTTTGAGGCTGCAACTTTTCTTGAAGAGTCTGCTCCTGTTGAACCCTTTAGATAA 2316 42.88 MHATWQKLWVLLFLDFAFPRSSFTFGKLKDFWLQSNNMKSDVKIKRGRSAGKRENIRKIMKCLCSGEKTAGDDMIPAAESPSAFENSGSGRSSRTGEIVKKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAITSKIMISIARRGDRPQRQSQNFTAPPMSMHAVSLLLEAILLKAKSLQGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLADASQEAILSYRRALLHQWNLDAGTTARIQKEFAIFLLYSGCEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALTISGDTRDLAGQIEELPPGILHRQERYHALALCYYGEGENLTALNLLRKVLGNHEDPKSIPALLMASKICGENCDLAEEGTSFAHRALQNLDHGCDQLEGVANCLLGVSLSVYSKSATADSEKSTRQSEAIEALEAARKTTRTADPNVLYHLSLEYADERKLDSALYYAKKCLKLEGGSNVKTWLLLARILSAQKRFTDSESIINAALDQTGKWEQAELLQTKAKLLIAQDEFKGAIETYSQLLAVFQVQSKNFSLGDKKLHKSSRNHARRLQLEVWHDLAVVYIRLSQWHDAEACLSKSKAISSHSAPRCHITGMLYEAKGLYKEALKAFMASLDIDPVHVPSLVSSAVVIRHLGHQSHPVIRSFLMDALRLDQTNHAAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEESAPVEPFR 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1596540 1601225 + ClG42_07g0011400.10 Clacu07g0114 252712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0114 771 SUPERFAMILY TPR-like 479 698 IPR011990 GO:0005515(InterPro)
Clacu07g0114 771 PANTHER PROTEIN NPG1 51 771 IPR043376 -
Clacu07g0114 771 Pfam Tetratricopeptide repeat 509 574 - -
Clacu07g0114 771 Gene3D Tetratricopeptide repeat domain 567 765 IPR011990 GO:0005515(InterPro)
Clacu07g0114 771 Pfam Tetratricopeptide repeat 666 691 IPR019734 GO:0005515(InterPro)
Clacu07g0114 771 Gene3D Tetratricopeptide repeat domain 371 566 IPR011990 GO:0005515(InterPro)
Clacu07g0114 771 SMART tpr_5 568 601 IPR019734 GO:0005515(InterPro)
Clacu07g0114 771 SMART tpr_5 190 223 IPR019734 GO:0005515(InterPro)
Clacu07g0114 771 SMART tpr_5 532 565 IPR019734 GO:0005515(InterPro)
Clacu07g0114 771 SMART tpr_5 659 692 IPR019734 GO:0005515(InterPro)
Clacu07g0114 771 SMART tpr_5 375 408 IPR019734 GO:0005515(InterPro)
Clacu07g0114 771 SMART tpr_5 497 530 IPR019734 GO:0005515(InterPro)
Clacu07g0114 771 SMART tpr_5 729 765 IPR019734 GO:0005515(InterPro)
Clacu07g0114 771 SMART tpr_5 625 658 IPR019734 GO:0005515(InterPro)
Clacu07g0114 771 MobiDBLite consensus disorder prediction 79 102 - -
Clacu07g0114 771 ProSiteProfiles TPR repeat profile. 659 692 IPR019734 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1814 Clacu-Chr8:27417977 Clacu07g0114 Clacu-Chr7:1596540 7.20E-158 transposed
Clacu11g1847 Clacu-Chr11:29593598 Clacu07g0114 Clacu-Chr7:1596540 1.40E-169 transposed
Clacu05g0461 Clacu-Chr5:3841420 Clacu07g0114 Clacu-Chr7:1596540 4.20E-238 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0114 K21843 - csv:101223229 1338.17