Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0139 ATGGCAGAAATGGCCTGCTCCGCTGCTGACCTTCACCACCTCCTCGGCGGCTCAGCCAACGCCACTGCCGTCGCGGAGTACATTTGCAGCCGATTCGATTCCATGTCGACGAAATTTGTCGACACAAGCTATGCGGTTGACAACACATACCTTCTGTTTTCAGCTTACCTTGTATTTGCAATGCAGCTTGGATTTGCAATGCTTTGTGCTGGGTCAGTTAGAGCCAAAAACACAATGAATATTATGTTAACTAATGTTCTCGATGCAGCTACTGGTGGAATATTTTATTATGTATTTGGGTTTGCTTTGGCATTTGGAACACCTTCAAATTCCTTCATTGGACACCATTATTTTGGACTCTCACAGTTTCCTTCTTCTTCATTTGATTATGGGTTCTTCCTTTTTCAATGGGCTTTTGCAATCGCTGCTGCTGGGATTACAAGTGGATCCATTGCTGAAAGAACTCAGTTTGTTGCCTATTTGATCTATTCCTCTGTTTTGACTGGTTGGGTATATCCAATCGTTTCTCATTGGTTTTGGTCGTCCGATGGGTGGGGAAGTGCCGCTCGGTCCGATAACCTCCTATTTGGGTCCGGCGTGATCGACTTCGCCGGCTCCGGCGTCGTCCACATGGTCGGCGGCATCGCCGGTTTATGGGGCGCCCTCATAGAAGGCCCTCGAATCGGCCGATTCGATCACGCCGGCCGCTCCGTCGCCCTCCGTGGCCACAGCGGCACATTGGTTGTTCTCGGCACTTTCCTCCTCTGGTTCGGCTGGTACGGCTTCAACCCCGGTTCATTTCTCAACATCCTCAAAGCCTACGGCCACCCCGCCGCCCCCTATTACGGCCAATGGAGCGCCATCGGCCGCACCGCCGTCACCACTACCCTCGCCGGCTGCACAGCAGCACTAACCACACTCTTCGGCAAACGCCTCCTCGTCGGCCACTGGAATGTCACCGATGTTTGCAACGGTTTATTAGGCGGATTCGCCGCCATAACCTCCGGTTGCGCGGTGGTGGATCCATGGGCAGCAATTGTGTGCGGGTTTGTCTCAGCCTGGGTTTTGATCGGATTGAACAAACTAGCGGAGAAAATGAAGTACGACGATCCACTAGAGGCGGCGCAATTGCACGGTGGTTGTGGAGCTTGGGGGATTTTGTTCACAGGGTTATTTGCAAAACAGGCTTATGTTAACGAGATTTATCCAGGGTTGCCGGAGAGGCCGTACGGGCTGTTGATGGGCGGCGGCGGGAGGTTGTTAGCGGCTCATTTAGTGCAAATTTTGTCGATTGTTGGTTGGGTTACTGTGACAATGGGGCTTGTTTTTTGGTTGTTGCATAAGTTTGAGTTGCTGAGGATTACGCCGGAGGAGGAGATGGCCGGAATGGACTTGACGAGCCACGGCGGTTTGGCTTATGTGTATAATGATGAAGAGAAGCTTTAA 1446 51.8 MAEMACSAADLHHLLGGSANATAVAEYICSRFDSMSTKFVDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNSFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGWVYPIVSHWFWSSDGWGSAARSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGHPAAPYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFVSAWVLIGLNKLAEKMKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYPGLPERPYGLLMGGGGRLLAAHLVQILSIVGWVTVTMGLVFWLLHKFELLRITPEEEMAGMDLTSHGGLAYVYNDEEKL 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1778540 1780945 + ClG42_07g0013900.10 Clacu07g0139 252737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0139 481 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Clacu07g0139 481 PANTHER AMMONIUM TRANSPORTER 26 476 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Clacu07g0139 481 Gene3D Ammonium transporter AmtB like domains 25 481 IPR029020 -
Clacu07g0139 481 SUPERFAMILY Ammonium transporter 44 454 - -
Clacu07g0139 481 Pfam Ammonium Transporter Family 50 473 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Clacu07g0139 481 NCBIfam ammonium transporter 47 473 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Clacu07g0139 481 FunFam Ammonium transporter 28 481 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0139 Clacu-Chr7:1778540 Clacu11g1211 Clacu-Chr11:19412029 6.00E-209 dispersed
Clacu05g0427 Clacu-Chr5:3632589 Clacu07g0139 Clacu-Chr7:1778540 7.30E-200 wgd
Clacu06g0770 Clacu-Chr6:8972852 Clacu07g0139 Clacu-Chr7:1778540 1.80E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0139 K03320 - csv:101223077 906.36