Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0143 ATGCCTTTCTCGACTTTGCACCTTCTTTTGGTTCTTCATGCGTTCGATTTGCTTTTCTCTTGCTCAGGACAATCTTCAGTTTCACCACACATATACTTATCTCCTTCCTTACAGCCAAACCTGCAAACAATGACCTCGGAAATGTCAACAGAGCATGCAAGGTTGGAGTCGATAAGTTTTTCATTTGTGCCTTCAAAGTTACGTGGTAACTGGATATTTAAGTCTTCTTTGGGACCATCTACTGCTCCTGCACCCTCTCCAGGTCCTAGGAGTGCACCCTTACCCATCCGACATCATCGACGGCGTCGTGGACGACCTCATGTGGTTGCTCCTACCCCATCAAAAGACCAAGGTTGTGATCAAATATGCATGGAGCCCCTTACTGCAGCTCCCTTTGGTTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAGACTTCTTCTGGATATAGCTCCATATGCTGTTTTCCCTGTGATGAACGAGCTTGAAAGTGAGATTGCAGTGGGGACTTATTTGGAGCAGAGCCAAGTGAAAATCATGGGTGCAACTGCAGACAGTCAAAATCAAGGAAGAACTATGGTGGACATAAATTTAGTACCTCTAGGAGAGAAGTTTGATAATACAACTGCAGTTCTGACATACAGAAGGTTTTGGGATAAAAAAGTGCATTTAAATATGACGCTTTTTGGTGATTATGAAGTTGTCTACATCAGCTATCCAGGGATTCCTTCTTCCCCGCCATATGGAGGGTACATGGGAAGTGCTCCTAGTGGAAGTGCGGGTGATCTTCCCATTACTGCAAATTTCGTTAATAAGAGCCAGAAGATGAATGTCAAAACAATTGCCATCATAGCACTTTCAGCATTTGTTGTGTTATTAGTGTTCATTGGAGCTCTCTCCATCTTTTTTAAATGGAGAAAAGTTGGCAGACCATCTAGTGCTGTTGGCCCTGTCTTCACGTCATCAATTAACAAAAGATCTGGTCTAGGATCAGCGTTATCAAGTAGCATTGCAAGCTCCACCTCTGTTTCCCTAATTTCCACAATGCCAACCAGTCTTCAATCTGTTAAAACATTTGCACTTTCTGAACTTGAGAAAGCAACAGACAAGTTTAGTTCAAAAAGGATTTTAGGTGAAGGGGGATTTGGCCGAGTTTACTGTGGTATTTTGGAAGATGGAAATGAAGTTGCAGTTAAGTTGCTTACTCGGGACAATCAGAATAGAGACCGTGAATTTATTGCCGAAGTTGAGATGTTGAGTAGACTGCATCATCGGAATCTTGTGAAACTGATTGGGATATGCATTGAAGGACGAACGCGCTGCTTAGTTTATGAGCTTGTCCATAATGGCAGTGTTGAGTCTCACTTGCATGGCATTGACAAGAGAAAAGGACCTCTTGACTGGGACGCACGATTAAAGATTGCTCTTGGAGCAGCAAGAGGTTTGGCATATCTTCATGAAGATTCTAATCCCCGCGTTATTCACCGTGATTTCAAGGCAAGTAATGTTCTGTTGGAAGTTGACTTCACCCCCAAGGTTTCGGATTTTGGATTGGCTAGGGAAGCAACGGAAGGAAGTGAACATATCTCAACACGGGTGATGGGGACTTTCGGGTATGTAGCCCCTGAATATGCAATGACTGGGCACCTGCTCGTCAAAAGTGATGTTTACAGTTATGGAGTTGTGCTACTTGAGCTTCTTTCGGGAAGAAAACCGGTGGACATGTCCCAACCACATGGTGAGGAGAATCTCGTAACGTGGGCGCGACCTCTATTGACCAGTAGAGAAGGTTTGGAGCAACTAGTGGATCCTTCTCTAGCTGGTACTTACGACTTCGATGACATGGCCAAGGTGGCTGCCATAGCTTCAATGTGCGTTCACCCAGAGGTGACCCAGAGGCCATTTATGGGAGAAGTTGTGCAGGCTCTAAAACTAATATACAACGACACAGACGAGACATGTGCAGATTACTGCAGTCAAAAGGAGTCCTCTGCTCGGGACTCAGATTTCAAAGGCGACCTTGTCCCATCCGACAGCAGTTGGTGGAATGCCGGTGGCCTTACACCCCGACTGACATATGGTCAAGCCTCTTCCTTCATCACCATGGAATACAGCTCTGGCCCTCTTGAAGAGATGGAAAACCGCCCGTTTTCAACTTCAAGTTTGGTAGGCGACGAGATATCTTTGCCTATTCGGCATGGAAACAGGTCAGGTCCGTTACGAACCGCTCGAAGCAAGCCTGCGTTCTATAGATTTTCAGGAAGTAGGAGCGAGCATGGAGGATTTCTTACAAGGCCTCCTTGGAACAGCAGTGGGTTTTGGTCATTACGATTCTTCCTTCTTCTTTCCAAATCAACCAGGCTGAGAATGTCGTCGTCAACCTCCTCCTCCGTTTCGATTTCACTTCCTGAAAATCGTGTGGTTCTTGGTGTTGGTATTACGTCTGTTGATTTTTTGGCGGCAGTGGCTTCTTATCCAAATCCTGACGACAAAATTCGAACCACAAGCTTTAAGGTACAAGGTGGAGGAAATGTAGGTAATGCTTTAACTTCTGCGGCTCGGTTGGGTTTAACACCAAGGATAATTTCCAAGGTTGCAGATGATACTCAAGGAAGGAGCATAATGGAGGAGCTAGAAGCTGATGGCATAGATACATCATTTCTTGTAGTTTCTGAAGGGGGTATTTCATCATTTTCCTATATTATTGTGGATAATAAAACGCACACTCGTACATGCATCCTCACCCCAGGATCTCCTCCGATGGTGCCAGATGACCTTTCACGATCAAGCTTGCTGTCTGCTTTAAACGGGGCTAGAATTGTATATTCTGACGTAGGATTGCATGAAATTGCTTTGCTTGTTGCACGAGAGGCAGCTCGGCAGAATATACCTATGTTGATCGATGCCGAAAGGAAAAAGGAAGGTGTGGATGATCTCCTGGCATTTGCTAGTTATGTAGTCTGCTCAACAAAATTTCCACAGGAATGGACTGAGGCACCATCGATTCCATCTGCACTTCTTTCCATGCTTCTGCGATATCCAAAACTCAGATTTGTGATTGTCACCTTGGGTGAAAATGGATGCATAATGCTCGAAAGAAATATTGATGAAACACCTGATCAAATGGAAGAGTTTGAAGTAGACAACTTACTTGAAGTGGTCAAGAGCAGAAGGGATGAGAATATAAATGTTCCAACTTTTGTTTCATCGCCAGTGGCCAAGTTGAGAGCTGAGGGGATAGGGACAGTTTGTGGCAGGCTGTTGCTCGGGACAGCTGAAAAAATACCGGAGTCCGAGATTGTTGATACGACCGGTGCTGGAGATGCATTCGTTGGAGCAGTTCTTTATGCCTTATGTGCCAACATGCCACCAGAGAACTTATTGCCATTTTCTGCTCAAGTGGTTTTACGGCCACAAACTTGGGGAAAACAAGTTCTAATGCCAGATTTGATGCTTTCTTCTGATGAACCAGCTATTATGAGACCTATAACACCTAAGTTGTCGAGCGGACACTCTTATATTCTTGCTGGAACAGATTACTTTTCAAGGTGGGCTGAAGCTGTGCCTTTGAGGGAATCAAAAAAAGAAAACATCGTAAGTTTTGTTCGTACGCACATCATTTATCGATATGGGATCCCTCATCGTATTGTCACAGATAATGGAAGACAGTTTGTCAACAGTCTGATGGACAAGTTGTGCGAAAAGTTTAAATTTAAGCAGTACAAGTCTTCTATGTACAATGCTGCAGCGAATGGACTGGCAGAAGCATTCAATAAGATTTTATGTAATCTGCTAAAAAAGCTAGAAGCACTTGACGAGAAGAGACCCGAGGCTCAACAGGCATTGGAATGTTATCAAGCACGAATGTCTAAAGCTTTCGACAAACATGTGAAGCCTCGATCGTTTCAGATTGGTGATTTAGTACTTGTTGTAAGAAGACCTATCATCACAACGAGACATACAGGGAATAAGTTCACACCTAAATGGGATGGACCCTATGTTGTTAAAGAAGTCTATACAAACGGAGCGTACAAGATCGTTGACCAAGATGGATTAAGAATCGGCCCAATCAATGACAAGTTCCTTAAAAGATTTTATGCTTAG 4104 44.05 MPFSTLHLLLVLHAFDLLFSCSGQSSVSPHIYLSPSLQPNLQTMTSEMSTEHARLESISFSFVPSKLRGNWIFKSSLGPSTAPAPSPGPRSAPLPIRHHRRRRGRPHVVAPTPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVRLLLDIAPYAVFPVMNELESEIAVGTYLEQSQVKIMGATADSQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVHLNMTLFGDYEVVYISYPGIPSSPPYGGYMGSAPSGSAGDLPITANFVNKSQKMNVKTIAIIALSAFVVLLVFIGALSIFFKWRKVGRPSSAVGPVFTSSINKRSGLGSALSSSIASSTSVSLISTMPTSLQSVKTFALSELEKATDKFSSKRILGEGGFGRVYCGILEDGNEVAVKLLTRDNQNRDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGIDKRKGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEVDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGEENLVTWARPLLTSREGLEQLVDPSLAGTYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCADYCSQKESSARDSDFKGDLVPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLVGDEISLPIRHGNRSGPLRTARSKPAFYRFSGSRSEHGGFLTRPPWNSSGFWSLRFFLLLSKSTRLRMSSSTSSSVSISLPENRVVLGVGITSVDFLAAVASYPNPDDKIRTTSFKVQGGGNVGNALTSAARLGLTPRIISKVADDTQGRSIMEELEADGIDTSFLVVSEGGISSFSYIIVDNKTHTRTCILTPGSPPMVPDDLSRSSLLSALNGARIVYSDVGLHEIALLVAREAARQNIPMLIDAERKKEGVDDLLAFASYVVCSTKFPQEWTEAPSIPSALLSMLLRYPKLRFVIVTLGENGCIMLERNIDETPDQMEEFEVDNLLEVVKSRRDENINVPTFVSSPVAKLRAEGIGTVCGRLLLGTAEKIPESEIVDTTGAGDAFVGAVLYALCANMPPENLLPFSAQVVLRPQTWGKQVLMPDLMLSSDEPAIMRPITPKLSSGHSYILAGTDYFSRWAEAVPLRESKKENIVSFVRTHIIYRYGIPHRIVTDNGRQFVNSLMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKILCNLLKKLEALDEKRPEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLVVRRPIITTRHTGNKFTPKWDGPYVVKEVYTNGAYKIVDQDGLRIGPINDKFLKRFYA 1367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1810688 1833939 + ClG42_07g0014300.10 Clacu07g0143 252741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0143 1367 Gene3D - 1154 1310 IPR036397 GO:0003676(InterPro)
Clacu07g0143 1367 Gene3D Transferase(Phosphotransferase) domain 1 447 669 - -
Clacu07g0143 1367 CDD STKc_IRAK 377 646 - -
Clacu07g0143 1367 Pfam Integrase core domain 1169 1247 IPR001584 GO:0015074(InterPro)
Clacu07g0143 1367 FunFam receptor-like serine/threonine-protein kinase ALE2 344 446 - -
Clacu07g0143 1367 SUPERFAMILY Ribonuclease H-like 1165 1273 IPR012337 -
Clacu07g0143 1367 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 1102 1115 IPR002173 GO:0016301(InterPro)
Clacu07g0143 1367 PANTHER OS01G0750732 PROTEIN 121 668 IPR050885 -
Clacu07g0143 1367 Pfam pfkB family carbohydrate kinase 811 1032 IPR011611 -
Clacu07g0143 1367 Pfam pfkB family carbohydrate kinase 1093 1131 IPR011611 -
Clacu07g0143 1367 SUPERFAMILY Protein kinase-like (PK-like) 355 649 IPR011009 -
Clacu07g0143 1367 Pfam Protein tyrosine and serine/threonine kinase 374 642 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g0143 1367 Gene3D Phosphorylase Kinase; domain 1 343 446 - -
Clacu07g0143 1367 CDD ribokinase_group_B 807 1134 - -
Clacu07g0143 1367 SUPERFAMILY Ribokinase-like 808 1132 IPR029056 -
Clacu07g0143 1367 Gene3D - 807 1135 IPR029056 -
Clacu07g0143 1367 MobiDBLite consensus disorder prediction 79 115 - -
Clacu07g0143 1367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g0143 1367 MobiDBLite consensus disorder prediction 94 108 - -
Clacu07g0143 1367 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524(InterPro)
Clacu07g0143 1367 PRINTS Ribokinase signature 810 831 IPR002139 GO:0016301(InterPro)
Clacu07g0143 1367 PRINTS Ribokinase signature 837 856 IPR002139 GO:0016301(InterPro)
Clacu07g0143 1367 PRINTS Ribokinase signature 1019 1030 IPR002139 GO:0016301(InterPro)
Clacu07g0143 1367 ProSiteProfiles Integrase catalytic domain profile. 1144 1283 IPR001584 GO:0015074(InterPro)
Clacu07g0143 1367 FunFam Receptor-like serine/threonine-protein kinase ALE2 447 663 - -
Clacu07g0143 1367 Coils Coil 1268 1288 - -
Clacu07g0143 1367 ProSiteProfiles Protein kinase domain profile. 371 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1595 Clacu-Chr3:29591849 Clacu07g0143 Clacu-Chr7:1810688 1.30E-177 dispersed
Clacu07g0143 Clacu-Chr7:1810688 Clacu09g0068 Clacu-Chr9:676813 4.10E-170 dispersed
Clacu09g0324 Clacu-Chr9:2759841 Clacu07g0143 Clacu-Chr7:1810688 3.80E-70 dispersed
Clacu10g1312 Clacu-Chr10:26159667 Clacu07g0143 Clacu-Chr7:1810688 4.30E-74 dispersed
Clacu11g1258 Clacu-Chr11:20916595 Clacu07g0143 Clacu-Chr7:1810688 2.00E-40 dispersed
Clacu11g1319 Clacu-Chr11:22493985 Clacu07g0143 Clacu-Chr7:1810688 1.00E-48 dispersed
Clacu07g0143 Clacu-Chr7:1810688 Clacu07g0145 Clacu-Chr7:1840626 9.20E-178 proximal
Clacu07g1332 Clacu-Chr7:28148286 Clacu07g0143 Clacu-Chr7:1810688 6.80E-55 transposed
Clacu10g1148 Clacu-Chr10:24024521 Clacu07g0143 Clacu-Chr7:1810688 5.40E-106 transposed
Clacu06g0754 Clacu-Chr6:8830151 Clacu07g0143 Clacu-Chr7:1810688 1.30E-49 wgd
Clacu07g0143 Clacu-Chr7:1810688 Clacu09g1278 Clacu-Chr9:13581245 1.80E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73677 PF07714 PK_Tyr_Ser-Thr 6.00E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0143 - - - 0.0