Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0161 ATGGTGGTCTCTCTTACACTACAGTTTTCCACCGCTTCTTCAATCCCTTTCCTTCTTCTTCTCATCATCTTCTTCGTTCAATCCAGTTTTGCTCGAGATGAGAGATTGCAGAGCTTCAATTCTTCGTCAATGGCGGACCGGTATATTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGCATTCGCAATAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATCGATGATTGTTGGCGTTGTGACCCACGTTGGCAATTGCGGCGAAAGCATCTGGCCAACTGTGGCATTGGGTTCGGACGTAATGCGGTTGGTGGCCGTGATGGGCGATACTACGTCGTCTCCAATCCTGGTGACGACGATCCTGTCAATCCCCGACCAGGGACCCTTCGTCATGCTGTGATTCAAGACAGGCCATTGTGGATTGTATTCAAAAGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGGCGTGGTGCTAATGTCCATATTGCTTATGGAGCTTGTATTACAATCCAATTCATAACCAATGTCATTATTCATGGTTTGCATATTCACGACTGCAAGCGGACGGGAAACGCCATGGTTCGAAGCTCGCCGAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGTATTTCCATTTTTGGGTCAAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTTCTGATGGACTCATTGATGCCATCATGGGATCAACTGCCATCACTATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGACTCTTATGTTAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGGTCTTATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCACTGGGAAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCCCCTGCGAATCCTTTTGCCAAAGAGGTCACAAAGAGAGTTGAAACAAATAACGGTGTATGGAGGCACTGGAATTGGAGATCAGAAGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCATCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGCACCATTACTTCAAATGCAGGTGCCCTTTCTTGTCGTAGGGGATTCCGTTGTTAA 1308 45.03 MVVSLTLQFSTASSIPFLLLLIIFFVQSSFARDERLQSFNSSSMADRYIKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSNPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKRTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVETNNGVWRHWNWRSEGDLMLNGAYFTPSGAGAASSYARASSLGAKSSSLVGTITSNAGALSCRRGFRC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2073726 2079164 - ClG42_07g0016100.10 Clacu07g0161 252759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0161 435 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Clacu07g0161 435 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Clacu07g0161 435 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Clacu07g0161 435 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Clacu07g0161 435 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Clacu07g0161 435 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Clacu07g0161 435 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Clacu07g0161 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Clacu07g0161 435 Gene3D - 86 428 IPR012334 -
Clacu07g0161 435 Pfam Pectate lyase 169 350 IPR002022 -
Clacu07g0161 435 FunFam Pectate lyase 86 428 - -
Clacu07g0161 435 SUPERFAMILY Pectin lyase-like 64 430 IPR011050 -
Clacu07g0161 435 PANTHER PECTATE LYASE 18-RELATED 26 432 IPR045032 GO:0030570(InterPro)
Clacu07g0161 435 SMART amb_all 161 358 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0161 Clacu-Chr7:2073726 Clacu08g1907 Clacu-Chr8:28244138 5.90E-171 dispersed
Clacu09g1989 Clacu-Chr9:34755578 Clacu07g0161 Clacu-Chr7:2073726 5.30E-169 transposed
Clacu05g0400 Clacu-Chr5:3446645 Clacu07g0161 Clacu-Chr7:2073726 1.40E-204 wgd
Clacu06g0789 Clacu-Chr6:9323202 Clacu07g0161 Clacu-Chr7:2073726 3.40E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0161 K01728 - csv:101207204 831.632