Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0185 ATGGGCGGCCGCACGTTGTTCACTTTGGCTGAGGTTGCCTCCCATGACAATCGCAACGACTGCTGGTTGATCATCGAAGACAAGGTGTATGATGTAACAAAATTCCTTGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGGCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGACGTTGGGCACAGTAGTGCTGCTAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACTATTCCTGTGAAAAGGAAGTACACTCCTCCAAAGCAGCCACTATACAACCAAGACAAGACACCAGAATTCATTATCAAGGTCCTCCAGTTTCTTGCTCCCCTAGTAATTTTGGGCTTGGCTTTTGGCATCCACCTCTATACCAAAACAACTTAA 402 45.77 MGGRTLFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLAGVGKDATNDFFDVGHSSAARAMMEEFYVGDIDSSTIPVKRKYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILGLAFGIHLYTKTT 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2289883 2291893 - ClG42_07g0018500.10 Clacu07g0185 252783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0185 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Clacu07g0185 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Clacu07g0185 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Clacu07g0185 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Clacu07g0185 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
Clacu07g0185 133 PANTHER CYTOCHROME B5 6 126 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Clacu07g0185 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 91 IPR036400 -
Clacu07g0185 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037(InterPro)
Clacu07g0185 133 FunFam Cytochrome b5 type B 2 84 - -
Clacu07g0185 133 SMART Cyt_b5_2 7 80 IPR001199 -
Clacu07g0185 133 Gene3D - 3 85 IPR036400 -
Clacu07g0185 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 8 79 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0185 K23490 - - csv:101212882 260.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0185 Clacu-Chr7:2289883 Clacu08g1204 Clacu-Chr8:21965189 3.70E-23 dispersed
Clacu11g0355 Clacu-Chr11:3210267 Clacu07g0185 Clacu-Chr7:2289883 9.50E-16 transposed
Clacu05g0379 Clacu-Chr5:3246844 Clacu07g0185 Clacu-Chr7:2289883 4.60E-50 wgd
Clacu06g0801 Clacu-Chr6:9626866 Clacu07g0185 Clacu-Chr7:2289883 3.00E-49 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0379 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Clacu01g0023 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.5e-51 197.2
Clacu06g0801 . 1 133 NADPH P450 reductases AT5G53560 64.7 9.7e-48 186.4
Clacu07g0185 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Clacu05g0379 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Clacu06g0801 . 1 133 NADPH P450 reductases AT5G48810 60.7 3.3e-46 181.4
Clacu07g0185 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Clacu01g0023 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.1e-40 162.2
Clacu05g0379 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Clacu06g0801 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.4e-46 182.6
Clacu07g0185 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Clacu01g0023 . 18 137 NADPH P450 reductases AT2G32720 65.0 8.8e-41 163.3
Clacu08g1204 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Clacu04g0547 . 2 281 NADPH P450 reductases AT5G17770 81.4 1.5e-130 462.6
Clacu10g1653 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.6e-127 450.3
Clacu02g2473 . 10 282 NADPH P450 reductases AT5G17770 73.3 3.5e-116 414.8
Clacu05g0379 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Clacu01g0023 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.5e-51 197.2
Clacu06g0801 . 1 133 NADPH P450 reductases AT5G53560 64.7 9.7e-48 186.4
Clacu07g0185 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Clacu05g0379 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Clacu06g0801 . 1 133 NADPH P450 reductases AT5G48810 60.7 3.3e-46 181.4
Clacu07g0185 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Clacu01g0023 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.1e-40 162.2
Clacu05g0379 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Clacu06g0801 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.4e-46 182.6
Clacu07g0185 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Clacu01g0023 . 18 137 NADPH P450 reductases AT2G32720 65.0 8.8e-41 163.3
Clacu08g1204 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Clacu04g0547 . 2 281 NADPH P450 reductases AT5G17770 81.4 1.5e-130 462.6
Clacu10g1653 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.6e-127 450.3
Clacu02g2473 . 10 282 NADPH P450 reductases AT5G17770 73.3 3.5e-116 414.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156