Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0185 ATGGGCGGCCGCACGTTGTTCACTTTGGCTGAGGTTGCCTCCCATGACAATCGCAACGACTGCTGGTTGATCATCGAAGACAAGGTGTATGATGTAACAAAATTCCTTGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGGCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGACGTTGGGCACAGTAGTGCTGCTAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACTATTCCTGTGAAAAGGAAGTACACTCCTCCAAAGCAGCCACTATACAACCAAGACAAGACACCAGAATTCATTATCAAGGTCCTCCAGTTTCTTGCTCCCCTAGTAATTTTGGGCTTGGCTTTTGGCATCCACCTCTATACCAAAACAACTTAA 402 45.77 MGGRTLFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLAGVGKDATNDFFDVGHSSAARAMMEEFYVGDIDSSTIPVKRKYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILGLAFGIHLYTKTT 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2289883 2291893 - ClG42_07g0018500.10 Clacu07g0185 252783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0185 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Clacu07g0185 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Clacu07g0185 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Clacu07g0185 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Clacu07g0185 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
Clacu07g0185 133 PANTHER CYTOCHROME B5 6 126 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Clacu07g0185 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 91 IPR036400 -
Clacu07g0185 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037(InterPro)
Clacu07g0185 133 FunFam Cytochrome b5 type B 2 84 - -
Clacu07g0185 133 SMART Cyt_b5_2 7 80 IPR001199 -
Clacu07g0185 133 Gene3D - 3 85 IPR036400 -
Clacu07g0185 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 8 79 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0185 Clacu-Chr7:2289883 Clacu08g1204 Clacu-Chr8:21965189 3.70E-23 dispersed
Clacu11g0355 Clacu-Chr11:3210267 Clacu07g0185 Clacu-Chr7:2289883 9.50E-16 transposed
Clacu05g0379 Clacu-Chr5:3246844 Clacu07g0185 Clacu-Chr7:2289883 4.60E-50 wgd
Clacu06g0801 Clacu-Chr6:9626866 Clacu07g0185 Clacu-Chr7:2289883 3.00E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0185 K23490 - csv:101212882 260.766