Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0205 ATGGCCAAAACAGGCGTCTTTGATTCTGATCCTGCAGTCATGGGGAAAGCCACGGAGTTGAAGAGGGAGTTACACAGACTTATCGTTGCTATAATTGATGACGATAATTACTCCACCGACACCATTGATAACGCTAAAGAAATTCTTTCTGCGCTCAAGGAGTTGAAACTCAGGAAGAGATCGCGTTCTTCTTCTAATCTTTTCGAGAATCTCATTTGTCCTGAGGAATTTCGTTGTCCGCTCTCTAGAGAACTCATGAGAGATCCTGTCATTGTGTCTACTGGCGAGACATATGACAGACCCTTCATTCAGAAATGGTTAAAATCAGGGAACAGGACTTGCCCCAGAACTCAGCAAGTTCTTTCACACACCAACCTCACTCCCAATCACTTGATTCGTCAAATGATAGCTCAATGGTGTGCAACTCGGGGAATTGAGTTGCAAGATCGCGTCCGTGTTCATTATCTTGATGACGATGTCATAACAGAGGCTGATCGAGACCGTTTTCTCACTTTAATAGAGAAAATGTCTATGACAATATCTGAACAGAAAGCAGCTGCAAAGGAGCTTCGAATGTTGACGAAGCGAATGCCCTCATTTCGAGCACTTTTTGGTGAGTCCCTTGATGCCATATCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTATTAGTGTTCACACGGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATTTGTCGATCCATGACAACAACAAGAAGCTTGTTGCCGAAACACCCAAGGTAATACCTCTTCTAATGGAAGCGTTGAGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCAGCCCTGTTTACTCTGTCAGCTCTCGACTCAAACAAAGCAATCATTGGGAAAGCTGGTGCCTTGCAACCCCTTATCGACCTATTAGATGAGGGGCATCCTTTATCAATCAAAGATGCTGCTTCAGCAATATTCAATCTTTGTATAATTCATGAAAACAAAGCAAGAGCCGTGCGAGATGGTGCAGTCCGAGTGCTTTTGAAAAAGATCATGAACCAGATGCATGTTGATGAGTTGTTGGCTATTCTGGCAATGCTATCATGCCATCAAAAAGCTATCGAAGAAATTGGAGAACTTGGAGCTGTCCCTTACTTACTCAGAATTATCAGGGAAAGTTCTTGTTCGCGTAACAAGGAAAATTGCATCGTGATCATCCATGCTATCTGCTTATACGATCGAACCAAGTGGAAGGATATGAGGGAGGAAGAGAAATGCTATCGAACTATATCTGAACTTGCTCAGAATGGAACTTCAAGGGCTAAGAGAAAGGCCAGTGGCATACTCGAAAGATTAAACAGGCTTGTAGATTCTGCCTCTAAATCCGGCACTCTCATCTTTGCTAAGACTCGGTCATCTGTTTGGAATTTATAG 1428 43.14 MAKTGVFDSDPAVMGKATELKRELHRLIVAIIDDDNYSTDTIDNAKEILSALKELKLRKRSRSSSNLFENLICPEEFRCPLSRELMRDPVIVSTGETYDRPFIQKWLKSGNRTCPRTQQVLSHTNLTPNHLIRQMIAQWCATRGIELQDRVRVHYLDDDVITEADRDRFLTLIEKMSMTISEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSISVHTDLQEDVITTLLNLSIHDNNKKLVAETPKVIPLLMEALRSGTMETRSNAAAALFTLSALDSNKAIIGKAGALQPLIDLLDEGHPLSIKDAASAIFNLCIIHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSCHQKAIEEIGELGAVPYLLRIIRESSCSRNKENCIVIIHAICLYDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRLVDSASKSGTLIFAKTRSSVWNL 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2429542 2432764 - ClG42_07g0020500.10 Clacu07g0205 252803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0205 475 SMART Ubox_2 76 139 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu07g0205 475 SUPERFAMILY RING/U-box 73 149 - -
Clacu07g0205 475 PANTHER U BOX DOMAIN-CONTAINING 40 452 - -
Clacu07g0205 475 Pfam U-box domain 74 143 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu07g0205 475 SMART arm_5 288 328 IPR000225 GO:0005515(InterPro)
Clacu07g0205 475 SMART arm_5 246 287 IPR000225 GO:0005515(InterPro)
Clacu07g0205 475 SMART arm_5 368 409 IPR000225 GO:0005515(InterPro)
Clacu07g0205 475 CDD RING-Ubox_PUB 74 126 IPR045210 -
Clacu07g0205 475 FunFam RING-type E3 ubiquitin transferase 72 146 - -
Clacu07g0205 475 FunFam RING-type E3 ubiquitin transferase 159 456 - -
Clacu07g0205 475 SUPERFAMILY ARM repeat 182 450 IPR016024 -
Clacu07g0205 475 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu07g0205 475 Gene3D - 167 470 IPR011989 -
Clacu07g0205 475 Pfam Armadillo/beta-catenin-like repeat 291 327 IPR000225 GO:0005515(InterPro)
Clacu07g0205 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0205 Clacu-Chr7:2429542 Clacu11g0750 Clacu-Chr11:7341749 3.60E-36 dispersed
Clacu07g0205 Clacu-Chr7:2429542 Clacu02g2083 Clacu-Chr2:34060589 7.20E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0205 K27971 - csv:101215688 800.045