Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu07g0217 | ATGGAGCGAAATTACCCGTATGAGAATGGAGTGATGATGACGAGAGACCCGAAACCAAGGCTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAGCTTGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTCTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGCCATTTGCAGAAATATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAAGAATGAAAGCAGTGGGACTCTTAGCAATTTCACCGGTGTAGAGGAAGATGACAGAGGGATGCAAATTGCCGAGGCTCTAAAATCACATGTCGAAGTGCAGAAAACAATACTAGAACAACTAGAGGTACAAAATAAACTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTCGCCATTGGCAGTAACCTTGGTAGTATTGAAAGCACAGGAATGCAGTTAATGAACTTTGATGCGGCTCTGTCAGATCAAATTGAAAAATTTAAGAAACAAGAAATGAGAGGAGGCATAGCAGACGTAAATGGTGTTTGTAAGAAGACCAATGATTCACTCATCCAGATATGCAAAGTGGAGGCTGGAGAAGAAGCTACAATAAACGAGTTTAATGTTGAAAAGAATATGATCAACTTTGATTTGAATTCCAAAGGCGGCTATGATTACAGTGCAAATGCGGCTGAAATACTTGACGCCAAAGTACTTCCTTGTTCAAGGTAA | 786 | 41.48 | MERNYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQKNESSGTLSNFTGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAIGSNLGSIESTGMQLMNFDAALSDQIEKFKKQEMRGGIADVNGVCKKTNDSLIQICKVEAGEEATINEFNVEKNMINFDLNSKGGYDYSANAAEILDAKVLPCSR | 261 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2546176 | 2549573 | + | ClG42_07g0021700.10 | Clacu07g0217 | 252815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu07g0217 | 261 | Pfam | Myb-like DNA-binding domain | 20 | 71 | IPR001005 | - | |
Clacu07g0217 | 261 | Pfam | MYB-CC type transfactor, LHEQLE motif | 105 | 151 | IPR025756 | - | |
Clacu07g0217 | 261 | Gene3D | - | 17 | 74 | - | - | |
Clacu07g0217 | 261 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 240 | IPR046955 | GO:0003700(InterPro) | |
Clacu07g0217 | 261 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 18 | 72 | IPR006447 | GO:0003677(InterPro) | |
Clacu07g0217 | 261 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 15 | 75 | IPR017930 | - | |
Clacu07g0217 | 261 | FunFam | Myb family transcription factor | 17 | 75 | - | - | |
Clacu07g0217 | 261 | SUPERFAMILY | Homeodomain-like | 18 | 75 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu07g0217 | Clacu-Chr7:2546176 | Clacu09g2308 | Clacu-Chr9:37762287 | 1.60E-30 | dispersed | |
Clacu07g0217 | Clacu-Chr7:2546176 | Clacu02g1922 | Clacu-Chr2:32774216 | 2.20E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47986 | PF00249 | Myb_DNA-binding | 2.70E-07 | CL0123 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu07g0217 | - | - | - | 0.0 |