Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0217 ATGGAGCGAAATTACCCGTATGAGAATGGAGTGATGATGACGAGAGACCCGAAACCAAGGCTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAGCTTGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTCTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGCCATTTGCAGAAATATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAAGAATGAAAGCAGTGGGACTCTTAGCAATTTCACCGGTGTAGAGGAAGATGACAGAGGGATGCAAATTGCCGAGGCTCTAAAATCACATGTCGAAGTGCAGAAAACAATACTAGAACAACTAGAGGTACAAAATAAACTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTCGCCATTGGCAGTAACCTTGGTAGTATTGAAAGCACAGGAATGCAGTTAATGAACTTTGATGCGGCTCTGTCAGATCAAATTGAAAAATTTAAGAAACAAGAAATGAGAGGAGGCATAGCAGACGTAAATGGTGTTTGTAAGAAGACCAATGATTCACTCATCCAGATATGCAAAGTGGAGGCTGGAGAAGAAGCTACAATAAACGAGTTTAATGTTGAAAAGAATATGATCAACTTTGATTTGAATTCCAAAGGCGGCTATGATTACAGTGCAAATGCGGCTGAAATACTTGACGCCAAAGTACTTCCTTGTTCAAGGTAA 786 41.48 MERNYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQKNESSGTLSNFTGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAIGSNLGSIESTGMQLMNFDAALSDQIEKFKKQEMRGGIADVNGVCKKTNDSLIQICKVEAGEEATINEFNVEKNMINFDLNSKGGYDYSANAAEILDAKVLPCSR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2546176 2549573 + ClG42_07g0021700.10 Clacu07g0217 252815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0217 261 Pfam Myb-like DNA-binding domain 20 71 IPR001005 -
Clacu07g0217 261 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Clacu07g0217 261 Gene3D - 17 74 - -
Clacu07g0217 261 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 240 IPR046955 GO:0003700(InterPro)
Clacu07g0217 261 NCBIfam myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677(InterPro)
Clacu07g0217 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Clacu07g0217 261 FunFam Myb family transcription factor 17 75 - -
Clacu07g0217 261 SUPERFAMILY Homeodomain-like 18 75 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0217 Clacu-Chr7:2546176 Clacu09g2308 Clacu-Chr9:37762287 1.60E-30 dispersed
Clacu07g0217 Clacu-Chr7:2546176 Clacu02g1922 Clacu-Chr2:32774216 2.20E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47986 PF00249 Myb_DNA-binding 2.70E-07 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0217 - - - 0.0