Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0225 ATGTCCCTCCTTAGTAGATTCTTTTACCGAAGACCCCCAGATGGGTTGCTGGAATTTGTTGAACGAGTATATATTTTTGATTCGTGCTTTTCAACTGAAGTATTGCCCGATGGTATGTACCAAATATATCTGCACGAAATCATAAACGAATTACATGAAGAATTCCCGGATTCCTCCTTTCTTGCATTTAATTTTCGTGAAGGGGAGAATAGGAGCCAATTTTCAGAAATGTTGTGCGAGTATGATGTCACTGTGATGGATTATCCTCGACAATACGAAGGTTGCCCTCTTCTTCCATTGTCGTTGATACAGCATTTCCTCCGTGTCTGTGAAAGTTGGCTTCTGCTTGGTAACCAACAAAATGTCATTCTTCTCCACTGTGAGAGGGGAGGTTGGCCACTCTTAGCATTCCTTTTGGCTAGCTTTTTGATATTTAGAAAAATGCAAAGTGGTGAGCGGAAAACTCTTGAAATTGTACATCGAGAAGCTCCCAAAGGGTTTTTGCAGCTCTTGTCACCATTAAATCCATTTCCATCTCAGCTCCGCTACTTGCAGTATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTCTCTTTAGATTGTGTAATTCTTCGTGGCATTCCGGGTTTTGATTCTCAGAATGGTTGCAGACCGGTCATTCGCATTTTTGGGAGGAATCTTTTTAGTAAGGGTGGGCTCTCCACGCAGATGCTTTTCTCTATGCCTAAGAAGAACAAGCCCCTCCGTCACTACCGTCAGGCAGACTGTGATGTGATTAAAATAGACGTGCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCGGAACCAGAAAGAGAAGTTATGATGTTTCGTATTATGTTTAATACAGCATTTATTCGATCAAACATACTGATGCTAACCTCTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCCGAGGTTTTGTTTGGGGAGATGGAAAGCATCTCCCCTCCAAGGGCTCCAACCTCCATTTTGAATGGTGAAGAGAAAGGTGGATTACCAATTGAAGCATTTTCCAAGGTTCAAGAACTTTTTAGTGGTGTCGAGTGGATTGATAGCAACGATGATGCTGCCTTGTGGCTACTTAAGAATCTTTCTGCCTTGAGTGATGTGAAAGAATTGTCAAGATTGCAAAATAAAACAAGTTCATACTCCTCACCAGTGGATTCTGAAGAGGAAAATAATACATCTAGCACTGCCGATAGTTCAGATGAAGTCTTTGATATGATTACAAAGCCTTTTGTTGATTCAACTAATATCAACTTTACAAATCCGGCCATGGTACATTCTTCTGAATTATTGTCTGACAAGATTGGTGCTAATGAAGTGAATATTTCATCAGAGTCTCCTCAATCTTCTGATGAATTTCAAGACAAGATATTTTCAAATAAAGAACCTCTACCCTCTTCATCACCTCCACTAACTTCTTTTGGCTCCCCAGCCCTTCCTACAAGTTCTTCAATGTCATCGCCACTGTTGCCTCCATCTAATCTACCATCTGCCAATGCTAGTGGGGAACTTGTCTCAAATAGAATGGCACCCACTGTTAAAGCGATTCCTCCACCACCGCCGCCACCACCTTTTTCTCTATTACATAATAAACCTCATGTAGAAACTTCCTTTGGTTCAGATTTGACCACTGTGACAATGCATGGGAGACCCCCTCCACCCCCTCCACCTCCACCTCAATATCCTACTAGTAACAATTCTATTACAGCCTCTACTCATTCACTTTCTCATGTTCCTAAATCGTCTGATACTCCTCCACCCCCACCTCCACCTCCTCCTTTTGTTCCAAAATCTTCTAGTGCTCCCCCGCCTCCGCCCCTGGTTCCAAAATCTTTTGGTGCTCCCCCACCTCCACCTCCACCTCCACCCGTAGTTCCAAAATCTTTTGGTGCTCCCCCACCTCCACCTCCACCTCCACCTCCACCTATAGTTCCAAAATCTTTTGGTGCTCCTCCACCTCCGCCTCCACCTCCACCTATAGTTCCAAAATCTTCTATTGCTCCTCCACCTCCGCCTCCACCTCCAGTTTCAAAATCTTCTAATGCTCCTCCACCTCCTCCTCCTCCACCTCCATTTCTAAAGTCATCTAATGCTCTTCCATCTCCGCCTCTGCCTCCGCCTCCACCTCCGCTTCTAAAATCATCCAGTGCTCCTCCACCTCCACCTCCGCCTCCACCTTCAAAATCTTCTAGTGCTCTGCCACCTCCACCTCCACCTCCACCTCCAAAATCTTCTAGTGCTCTGCCACCTCCACCTCCACCTCCACCTCCACCTTCAATTCCAAAGCTTTCTGGTGCTTCACCTCCACCTCCTCTTCCACAATCAAATCGTGGTGCACCAGCTCCACCTCCTCCACCACCAAAACCTCCCAGTGTTGAGCTGCCAAGTCATGGTGCTAAATCAAGTAGACCTCCTCCACCTCCTCCACCAGCAAAGCCCTTCAATGCTCATCCTCCGACGAGCCATGGTGCTACACCAATGCCACCCCCTCCCCCCGGGTCAAGAGGATCAAATGTACCACCACCTCCTCCTCCTTCTGGACGAGGCAAAGCTTCCCTAGGATCAACAACTCAAGGAAGAGGCCGAGTTGCTACAGGAGTTGTAAATGCTCCAAAAAAAACCACTTTAAAACCATTACACTGGGTAAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAATCAATCGAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGAAGTGGCAGTAAAGGTGGAGGACGACGTGGTTCCAGCATCAACAAACCTGAAAAAGTGCAACTGATTGACCTGCGGAGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACGTTGAAGAGTTATACAGGTGACAGAGAAATGCTTGGAAAGTGTGAGCAGTTTTTTCTCGAGCTAATGAAGGTCCCACGGATAGAGCCCAAGTTACGAGTATTTGCTTTCAAAATCACCTTTTCTAGTCAGGTGAATGATTTGAGATATCATTTGAACACAATAAATGATGCTACAAGAGAGGTCAAAGAATCCGCAAAATTGCGTCAGATAATGCAAACGATTCTTACACTGGGAAATGCGTTAAACCAGGGTACTGCTCGAGGCTCAGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTCATTGCAGAGAAAATGCCAGAGTTACTTGATTTTGACAAGGACCTCGTTCATTTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAGGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACCGCTTCAGAAAATGATGGTGCCATCTCTGCTGGTTTCCAGAAGGTGCTGAAGAATTTTCTTGATACGGCTGAAGCTGAAGTAAGGGCACTTATCTCTTTATATTCTGAAGTGGGGAGAAATGCTGATTCACTATCCCAGTACTTTGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTTACTCAAATTTTAATAGTCTTCGTTAAGATGTTCAAGAAGTCACGAGAAGAAAATGAAAGGCAGGCCGATGCTGATAAGAGAAAAACAGAGAAGGAAGCCATGAAAGAACGAAGTTCGGTTAAAGCAAAGTTTGAATGTGAATATCAGATTTGTGATTCATGGACTTCCATCAAGGTTGGCTATTTGCCTTCCTGTACAGCCATTTCTTTCATCAATATCGTGGCTTGTAAATACGATGTGACGCAATTACAGGCTCGGGGAGTGGTTGCCATTTGA 4053 44.41 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDGMYQIYLHEIINELHEEFPDSSFLAFNFREGENRSQFSEMLCEYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNVILLHCERGGWPLLAFLLASFLIFRKMQSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGIPGFDSQNGCRPVIRIFGRNLFSKGGLSTQMLFSMPKKNKPLRHYRQADCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKERYPKGFRAEVLFGEMESISPPRAPTSILNGEEKGGLPIEAFSKVQELFSGVEWIDSNDDAALWLLKNLSALSDVKELSRLQNKTSSYSSPVDSEEENNTSSTADSSDEVFDMITKPFVDSTNINFTNPAMVHSSELLSDKIGANEVNISSESPQSSDEFQDKIFSNKEPLPSSSPPLTSFGSPALPTSSSMSSPLLPPSNLPSANASGELVSNRMAPTVKAIPPPPPPPPFSLLHNKPHVETSFGSDLTTVTMHGRPPPPPPPPPQYPTSNNSITASTHSLSHVPKSSDTPPPPPPPPPFVPKSSSAPPPPPLVPKSFGAPPPPPPPPPVVPKSFGAPPPPPPPPPPPIVPKSFGAPPPPPPPPPIVPKSSIAPPPPPPPPVSKSSNAPPPPPPPPPFLKSSNALPSPPLPPPPPPLLKSSSAPPPPPPPPPSKSSSALPPPPPPPPPKSSSALPPPPPPPPPPSIPKLSGASPPPPLPQSNRGAPAPPPPPPKPPSVELPSHGAKSSRPPPPPPPAKPFNAHPPTSHGATPMPPPPPGSRGSNVPPPPPPSGRGKASLGSTTQGRGRVATGVVNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSSINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKSYTGDREMLGKCEQFFLELMKVPRIEPKLRVFAFKITFSSQVNDLRYHLNTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLIAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISAGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADADKRKTEKEAMKERSSVKAKFECEYQICDSWTSIKVGYLPSCTAISFINIVACKYDVTQLQARGVVAI 1350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2651977 2663003 + ClG42_07g0022500.10 Clacu07g0225 252823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0225 1350 Gene3D Formin, FH2 domain 898 1282 IPR042201 -
Clacu07g0225 1350 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 187 IPR029021 -
Clacu07g0225 1350 MobiDBLite consensus disorder prediction 489 901 - -
Clacu07g0225 1350 MobiDBLite consensus disorder prediction 594 610 - -
Clacu07g0225 1350 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Clacu07g0225 1350 MobiDBLite consensus disorder prediction 830 878 - -
Clacu07g0225 1350 Pfam C2 domain of PTEN tumour-suppressor protein 198 338 IPR014020 -
Clacu07g0225 1350 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Clacu07g0225 1350 SUPERFAMILY Formin homology 2 domain (FH2 domain) 909 1289 - -
Clacu07g0225 1350 SMART PTEN_C2_2 198 338 IPR014020 -
Clacu07g0225 1350 MobiDBLite consensus disorder prediction 489 536 - -
Clacu07g0225 1350 Gene3D - 197 342 - -
Clacu07g0225 1350 FunFam Formin-like protein 895 1282 - -
Clacu07g0225 1350 MobiDBLite consensus disorder prediction 406 431 - -
Clacu07g0225 1350 Pfam Formin Homology 2 Domain 901 1271 IPR015425 -
Clacu07g0225 1350 MobiDBLite consensus disorder prediction 578 593 - -
Clacu07g0225 1350 ProSiteProfiles Formin homology-2 (FH2) domain profile. 896 1296 IPR015425 -
Clacu07g0225 1350 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Clacu07g0225 1350 MobiDBLite consensus disorder prediction 950 969 - -
Clacu07g0225 1350 Coils Coil 1177 1204 - -
Clacu07g0225 1350 SMART it6_source 515 1331 IPR015425 -
Clacu07g0225 1350 PANTHER FORMIN-J 797 1294 IPR051144 -
Clacu07g0225 1350 MobiDBLite consensus disorder prediction 611 823 - -
Clacu07g0225 1350 MobiDBLite consensus disorder prediction 543 558 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0225 K28090 - - csv:101217517 1048.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1785 Clacu-Chr5:26968209 Clacu07g0225 Clacu-Chr7:2651977 1.40E-240 dispersed
Clacu06g1702 Clacu-Chr6:27698462 Clacu07g0225 Clacu-Chr7:2651977 8.00E-203 dispersed
Clacu07g0225 Clacu-Chr7:2651977 Clacu06g1324 Clacu-Chr6:24173019 7.50E-249 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu07g0232 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 51.7 3.6e-190 662.5
Clacu11g0239 . 459 935 FH2 protein (formin) Gene Family AT3G25500 66.9 2.1e-166 583.6
Clacu02g1252 . 446 902 FH2 protein (formin) Gene Family AT3G25500 60.1 8.2e-142 501.9
Clacu03g1743 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.0e-104 377.1
Clacu07g0232 . 618 1072 FH2 protein (formin) Gene Family AT2G43800 60.1 1.3e-140 497.7
Clacu02g1252 . 480 918 FH2 protein (formin) Gene Family AT2G43800 55.1 9.1e-126 448.4
Clacu02g0858 . 283 595 FH2 protein (formin) Gene Family AT4G15200 54.1 3.5e-52 203.0
Clacu05g1644 . 564 710 FH2 protein (formin) Gene Family AT4G15200 66.9 1.3e-46 184.5
Clacu05g1644 . 565 1001 FH2 protein (formin) Gene Family AT5G54650 68.9 2.8e-167 586.3
Clacu02g0858 . 449 912 FH2 protein (formin) Gene Family AT5G54650 63.1 4.1e-158 555.8
Clacu07g0232 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.6 7.1e-102 369.0
Clacu02g1252 . 31 921 FH2 protein (formin) Gene Family AT5G67470 58.3 2.2e-236 815.8
Clacu07g0232 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.9 9.8e-136 481.5
Clacu11g0239 . 472 917 FH2 protein (formin) Gene Family AT5G67470 60.6 1.1e-131 468.0
Clacu03g1743 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 8.9e-105 378.6
Clacu05g2694 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.3e-126 448.7
Clacu07g0232 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.3 9.8e-100 361.7
Clacu02g1252 . 504 879 FH2 protein (formin) Gene Family AT5G48360 50.5 1.6e-89 327.8
Clacu02g1252 . 484 878 FH2 protein (formin) Gene Family AT3G05470 52.0 3.6e-106 383.3
Clacu05g1644 . 570 984 FH2 protein (formin) Gene Family AT3G05470 50.4 6.1e-106 382.5
Clacu07g0225 . 982 1293 FH2 protein (formin) Gene Family AT1G42980 50.8 5.9e-69 258.1
Clacu07g0225 . 1 1300 FH2 protein (formin) Gene Family AT1G31810 65.9 0.0e+00 1225.3
Clacu06g1324 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.4e-241 833.6
Clacu06g1702 . 1398 1719 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Clacu04g1265 . 980 1290 FH2 protein (formin) Gene Family AT5G07650 70.4 1.1e-119 427.9
Clacu06g1324 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Clacu07g0225 . 966 1297 FH2 protein (formin) Gene Family AT5G07650 59.6 3.4e-108 389.8
Clacu05g1785 . 1087 1445 FH2 protein (formin) Gene Family AT5G07650 55.4 4.3e-95 346.3
Clacu06g1702 . 1325 1712 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Clacu04g1265 . 903 1290 FH2 protein (formin) Gene Family AT5G07770 63.2 2.9e-128 456.1
Clacu06g1324 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.3e-116 415.6
Clacu07g0225 . 902 1291 FH2 protein (formin) Gene Family AT5G07770 55.2 2.8e-115 412.9
Clacu05g1785 . 1011 1437 FH2 protein (formin) Gene Family AT5G07770 51.4 5.5e-103 372.1
Clacu05g1785 . 1003 1445 FH2 protein (formin) Gene Family AT3G32400 65.6 1.5e-149 526.6
Clacu06g1324 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.8e-148 522.3
Clacu06g1702 . 1325 1719 FH2 protein (formin) Gene Family AT3G32400 65.2 8.6e-142 500.7
Clacu07g0225 . 902 1296 FH2 protein (formin) Gene Family AT3G32400 65.5 9.5e-141 497.3
Clacu04g1265 . 873 1293 FH2 protein (formin) Gene Family AT3G32400 58.1 8.0e-132 467.6
Clacu06g1324 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.0e-290 995.7
Clacu06g1702 . 1326 1719 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Clacu04g1265 . 904 1293 FH2 protein (formin) Gene Family AT5G07780 58.1 2.1e-113 406.4
Clacu07g0225 . 903 1292 FH2 protein (formin) Gene Family AT5G07780 52.0 8.1e-102 367.9
Clacu06g1324 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.8e-101 366.7
Clacu06g1702 . 1 1728 FH2 protein (formin) Gene Family AT5G07740 60.3 0.0e+00 1132.9
Clacu06g1702 . 1397 1726 FH2 protein (formin) Gene Family AT5G07760 74.4 3.2e-128 456.4
Clacu04g1265 . 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.6 2.6e-117 420.2
Clacu06g1324 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.2e-110 396.0
Clacu07g0225 . 976 1297 FH2 protein (formin) Gene Family AT5G07760 60.1 3.9e-105 379.8
Clacu05g1785 . 1086 1454 FH2 protein (formin) Gene Family AT5G07760 54.0 8.9e-94 342.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010762 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 0 1 1 3 1 32