Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0234 ATGACTCTATTTTCATTCTCATTCTTGTTCGTAGTACTTCTTCAGTTATCTTTTCTGTTTAATAGTCTGACTGCCAAAAACGGCGACCACCACCACCACCACCTCCGATCACCAGGACTGAATACGAACCCGAACCCGCGACTCCATCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAAGTCATTTACTCGGACCCAAAAAACCACACTACCAATTGGGTGGGGCCATCAGTTTGCAACTACTTTGGAGTGTATTGTGCCCCATCTCTTGATGACCCAAAAATCCAAGTGGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAACAGATCTTGCTCTGCTTCATCTCAACAGCAACCGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTAGATTTAAGCAACAACAGATTCGTAGGCCCTTTTCCTTCTGTTGTTCTTCTCCTTCCAAAATTAACATATCTTGATCTTCGATTCAACGAATTTGAAGGCCCAATTCCCTCTGAACTCTTCAACAAAACCCTCGACGCCATTTTTATCAACAGCAATCGTTTCACCAACATTATCCCACGAAACATCGGTGGAAAATCTGCCTCTGTGATTGTCTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCCACAATTGCAAGTTTCGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCTGGCTGTTTGCCACAAGAAATTGGGTTTTTGTATAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAATGGGTCCTTTGCCTTATAGTTTAGCTGGGTTAGCTCAATTGGAGCAATTGAATTTAGCCCATAATTTGTTTAGTGGGAATTTGTATGAAGGTATCTGTAGCCTTCCGAATTTGGAGAATGTGACAGTTTCTTATAATTACTTTTGTGAAGAAGAAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGGCGGAATTGCTTGCCGGAGAAGCCGTTGCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGACTGTTTTGAGCATCCGTGCGGCGGCGGCGGAGGTAATGGTTCTAGTATTGCGGCGGTTCCGGCTCCGACGCCAATTTCTTCACCTTCTTCCTTTGTTGCCCCTTCCCACTTGTGA 1218 43.6 MTLFSFSFLFVVLLQLSFLFNSLTAKNGDHHHHHLRSPGLNTNPNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLLLPKLTYLDLRFNEFEGPIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLMGPLPYSLAGLAQLEQLNLAHNLFSGNLYEGICSLPNLENVTVSYNYFCEEEGICRNLTAKGIAFDDRRNCLPEKPLQRSKKECSAVVERPVDCFEHPCGGGGGNGSSIAAVPAPTPISSPSSFVAPSHL 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2774208 2775425 - ClG42_07g0023400.10 Clacu07g0234 252832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0234 405 MobiDBLite consensus disorder prediction 385 405 - -
Clacu07g0234 405 Gene3D Ribonuclease Inhibitor 51 215 IPR032675 -
Clacu07g0234 405 Gene3D Ribonuclease Inhibitor 216 339 IPR032675 -
Clacu07g0234 405 SUPERFAMILY L domain-like 51 325 - -
Clacu07g0234 405 MobiDBLite consensus disorder prediction 387 405 - -
Clacu07g0234 405 FunFam Leucine-rich repeat extensin-like protein 1 52 213 - -
Clacu07g0234 405 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 22 391 IPR051582 -
Clacu07g0234 405 Pfam Leucine Rich Repeat 146 162 IPR001611 GO:0005515(InterPro)
Clacu07g0234 405 Pfam Leucine Rich Repeat 169 190 IPR001611 GO:0005515(InterPro)
Clacu07g0234 405 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Clacu07g0234 405 Pfam Leucine Rich Repeat 124 143 IPR001611 GO:0005515(InterPro)
Clacu07g0234 405 Pfam Leucine Rich Repeat 264 286 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0563 Clacu-Chr5:4743687 Clacu07g0234 Clacu-Chr7:2774208 4.20E-48 dispersed
Clacu07g0234 Clacu-Chr7:2774208 Clacu11g0393 Clacu-Chr11:3618939 5.40E-33 dispersed
Clacu07g0234 Clacu-Chr7:2774208 Clacu06g1101 Clacu-Chr6:20726194 2.40E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0234 - - - 0.0