Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0239 ATGACCACCGGAAGGGAAATTCTCCACAAGATGAAGGTGAAGGCAGGGTTTTGTTCATCAGCAGCAGCTGATACAGGGAAAGGCAAAGGCAAATTGACGACAAATAATAATAATAATAATAATAAGAATATAAGCCATGGGAGTTATTTGGTGAAGGGAAAAGGCAACCATCCAATGGAAGATTACTTGGTTTCCGATTTCAAGCGAGTCAAAGAACATGATTTGGGTTTGTTTGCCATTTTCGATGGCCATTTGGGCCACGATGTTGCTAATTTCTTGCAAAATAATCTCTTTCATAACATCCTCAAAGAGGCTGATTTCTGGGGCGAAACAAGAAAAGCCATAAAAAGAGCTTACAAGAAAACAGACGAAGAAATATTGGATAAAGTGAAGCAACTTGGAAAAGGAGGATCAACGGCCGTAACCGCGATCTTGATCGACGGCCACAAACTTGTGGTTGCCAACGTCGGAGATTCTAGAGCTGTTTTGTGCAGAAACGGCGTCGCCGAGCAACTTTCCGTTGACCACGAACCCACCAAAGAGAAAAGAGAAATTGAAAGCCGTGGTGGTTTTGTATCAAATATTCCAGGAGATGTTCCACGTGTCGACGGACAATTGGCGGTGGCCAGAGCATTTGGAGATAAGAGTTTAAAAGTCCACCTCAGCTCAGAACCTGACGTGGAAGTCAAAACGGTGGACGAAACTACAGAGTTCATGATTTTGGCTAGCGATGGCATATGGAAGGTGATGACAAACCAAGAAGCAGTAGAATCAATTAGACATATAAAGGATGCGAACATAGCGGCCAGACGACTTATCGACGAAGCAGTGTCTAGAAAAAGCAAGGACGACATATCGTGCATTGTTGTTAGGTTTCGATGA 882 43.31 MTTGREILHKMKVKAGFCSSAAADTGKGKGKLTTNNNNNNNKNISHGSYLVKGKGNHPMEDYLVSDFKRVKEHDLGLFAIFDGHLGHDVANFLQNNLFHNILKEADFWGETRKAIKRAYKKTDEEILDKVKQLGKGGSTAVTAILIDGHKLVVANVGDSRAVLCRNGVAEQLSVDHEPTKEKREIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKVHLSSEPDVEVKTVDETTEFMILASDGIWKVMTNQEAVESIRHIKDANIAARRLIDEAVSRKSKDDISCIVVRFR 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2805238 2808547 + ClG42_07g0023900.10 Clacu07g0239 252837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0239 293 FunFam Probable protein phosphatase 2C 39 36 293 - -
Clacu07g0239 293 MobiDBLite consensus disorder prediction 29 45 - -
Clacu07g0239 293 Gene3D - 27 293 IPR036457 -
Clacu07g0239 293 SMART PP2C_SIG_2 50 292 IPR001932 -
Clacu07g0239 293 CDD PP2Cc 44 292 IPR001932 -
Clacu07g0239 293 MobiDBLite consensus disorder prediction 24 45 - -
Clacu07g0239 293 ProSiteProfiles PPM-type phosphatase domain profile. 45 292 IPR001932 -
Clacu07g0239 293 SMART PP2C_4 40 290 IPR001932 -
Clacu07g0239 293 Pfam Protein phosphatase 2C 57 285 IPR001932 -
Clacu07g0239 293 PANTHER PROTEIN PHOSPHATASE 40 290 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu07g0239 293 SUPERFAMILY PP2C-like 38 292 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0239 Clacu-Chr7:2805238 Clacu11g1596 Clacu-Chr11:27124233 2.10E-87 dispersed
Clacu01g2600 Clacu-Chr1:36262009 Clacu07g0239 Clacu-Chr7:2805238 3.60E-85 transposed
Clacu03g0064 Clacu-Chr3:801336 Clacu07g0239 Clacu-Chr7:2805238 1.60E-37 transposed
Clacu06g0717 Clacu-Chr6:8379695 Clacu07g0239 Clacu-Chr7:2805238 7.00E-29 transposed
Clacu08g0784 Clacu-Chr8:17866112 Clacu07g0239 Clacu-Chr7:2805238 4.00E-46 transposed
Clacu08g1921 Clacu-Chr8:28318448 Clacu07g0239 Clacu-Chr7:2805238 3.60E-31 transposed
Clacu11g1978 Clacu-Chr11:30743185 Clacu07g0239 Clacu-Chr7:2805238 1.00E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0239 K17506 - csv:101211399 501.516