Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu07g0241 | ATGAGCAGCGTTTGTGCGGAGCAACAGAAATTTCAATTTCAATTTCAATTTCCGTCTTCAGCTTCTGCTGCTTCTTCTTCGTGTTCTTCGTGGTTTCTTAAAGATATTAACGTTCCGCCGAGGAAGCTTGTCGCTGCGGTGAGACGAGAAAACGGTGAAATGTGTTCTGATTCGCCGCGGTTTTCGTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTTAATGGCGAGGATGAAGCGGAGGAGGATGGAGATCCGTATTCGTCAGACCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCAGGAGAGAAGGCACGGAGGCGAGATCCTCGTCGGTTTCATTACTCTGGCACGATGTGTCCGGAGTTTCGTCGCGGCGGTTGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAATGTTGGCTTCATCCCGCGAGGTATCGTACTGAAGCTTGTAAAGATGGAAAAAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCTCCTGTGAGTAATTTTCAAGGCGGCTCTTGTTCTTCACCGAATAAGAGAAATTCTGGTCTTAGATCGGCCACTTCCGGTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCACTTCCTCACCGACTTCAACGCTTTTCGGAATGTCTCATCTGTCTCCGCCACACTCTCCGCCGCTCTCGCCGGGAAAACCTCGGTCATCGATTAATGGATTTTCACCGATTTCGAGGTACAATCCTGATCAGTCTAAGTTAAATGGAGTTTTGAGCTATAAAGATGCACTGACTGAGCTGATGAGCTCAATTGAATCCATGAATATCGACGACGCCAATGCCACTTTAGCCGCCGCCGCCACCGCCACTCCAAGACAGACGATTCCTTGGATCGATGTTTCATCTCTCAACTCTGAAGATCAACTGCAGTTTGATCTCTCACCTTCTACTCCAAACGTGTCCGTCGAGAACAAAGGTAACCCCGACAATGGATGGGCCTCCTCCTCCGATCCGGATCTTAGATGGGTTAATGATCTGCTGATGTAA | 1137 | 48.11 | MSSVCAEQQKFQFQFQFPSSASAASSSCSSWFLKDINVPPRKLVAAVRRENGEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRNSGLRSATSGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGKPRSSINGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAAAATATPRQTIPWIDVSSLNSEDQLQFDLSPSTPNVSVENKGNPDNGWASSSDPDLRWVNDLLM | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2814102 | 2815238 | + | ClG42_07g0024100.10 | Clacu07g0241 | 252839 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu07g0241 | 378 | MobiDBLite | consensus disorder prediction | 262 | 277 | - | - | |
| Clacu07g0241 | 378 | MobiDBLite | consensus disorder prediction | 344 | 366 | - | - | |
| Clacu07g0241 | 378 | FunFam | Zinc finger CCCH domain-containing protein 66 | 90 | 158 | - | - | |
| Clacu07g0241 | 378 | MobiDBLite | consensus disorder prediction | 344 | 364 | - | - | |
| Clacu07g0241 | 378 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 159 | IPR000571 | GO:0046872(InterPro) | |
| Clacu07g0241 | 378 | Gene3D | - | 132 | 195 | - | - | |
| Clacu07g0241 | 378 | PANTHER | UNKEMPT FAMILY MEMBER | 59 | 349 | IPR045234 | - | |
| Clacu07g0241 | 378 | SMART | c3hfinal6 | 132 | 158 | IPR000571 | GO:0046872(InterPro) | |
| Clacu07g0241 | 378 | SMART | c3hfinal6 | 167 | 190 | IPR000571 | GO:0046872(InterPro) | |
| Clacu07g0241 | 378 | MobiDBLite | consensus disorder prediction | 247 | 277 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu03g1629 | Clacu-Chr3:29942078 | Clacu07g0241 | Clacu-Chr7:2814102 | 5.00E-57 | dispersed | |
| Clacu07g0241 | Clacu-Chr7:2814102 | Clacu11g0335 | Clacu-Chr11:3007710 | 3.80E-57 | dispersed | |
| Clacu07g0241 | Clacu-Chr7:2814102 | Clacu05g1927 | Clacu-Chr5:28503474 | 1.00E-57 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 47988 | None | None | None | None | Clacu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu07g0241 | K23047 | - | csv:101211149 | 592.808 |