Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0242 ATGAAGCGTTATGTTTACATCAACGACGGTGAACCATCAACTGATCTTTATTGCGATAACCGCATTTCAAACCGGAAATACACATTATTGAACTTTCTCCCCAAAAATTTATGGGAACAGTTCAGCCGCTTCATGAACCAATACTTTTTGTTAATAGCATGCCTTCAGTTGTGGCCGCTTATAACTCCAGTAAATCCCGCCAGTACATGGGGTCCGCTTATCTTCATTTTTGCTGTGTCGGCAACAAAAGAGGCATGGGATGATTACAATAGATATTTATCTGACAAAAAAGCAAATGAGAAAGAAGTTTGGGTTGTGAAGCAGGGTACCAGAAAAATTATTCAAGCACAAGATATTCATGTTGGTAATTTGGTATGGCTTAGGGAGAATGATGAAGTGCCTTCCGATCTTGTTTTGATTGGTACCTCTGATCCTCAAGGAATTTGCTATATAGAGACATCTGCCCTTGATGGAGAAACTGACTTGAAGACAAGGGTCATACCCTCAGCTTGCATGGGAATCGATTTTGATCTGTTAAACAAGATCAAGGGAGTTATAGAGTGTCCTAAACCAGATAAGGATATTAGAAGATTTGATGCAAACATTAGGTTATTTCCTCCTTTTATTGACAATGACGTGTGCCCTTTAACAATAAAAAACACAATTCTCCAGTCATGTTACTTGCGGAACACAGAGTGGGTCTGTGGAGTAGCCGTCTATACAGGCAATGAAACCAAGCTTGGAATGAGCCGGGGTGTCCCAGAACCAAAACTTACAGCTATGGATGCAATGATCGACAAGTTAACTGGTGCTATATTTGTATTTCAACTCGTGGTGGTTGTTGTCCTCGGTATAGCTGGTAATGTGTGGAAGGATTCTGAAGCTAGAAAGCTATGGTATGTGCAACATCCAGAGGAAGGTCCATGGTATGAGCTTTTGGTTATCCCTCTTCGGTTTGAGCTTCTTTGTTCAATCATGATACCTATTTCAATTAAGGTGTCTCTGGATCTTGTAAAGAGCTTATATGCAAAATTTATTGATTGGGACTATGATATGATTGACTGTGAAACTGGTATTCCTTCCCATGCTACGAATACAGCAATAAGTGAGGACCTGGGACAAGTCGAATTCATTTTGACAGATAAAACCGGTACCCTCACTGAAAATAAGATGATCTTCAGGAGATGTTGTGTCAGTGGCATTTTTTATGGAAATGAAAATGGAGATGCCTTGAAAGATAAAAAGTTGCTCAGTGCTATTGCAAGCAGCTCTCCGGATGTTATAAGATTTCTCACAATTATGGCAATATGTAATACAGTGGTGCCTACAAGAAGCAAAAGTGGAAATATCTTGTACAAGGCACAGTCACAGGATGAGGATGCTCTCGTGAATGCTGCTGCCTATTTGCATATGGTATTTGTCAATAAGAACGCTAATATTCTTGAAATTCAGTTTAATGGAATGCTAAATAGATATGAGCTCCTAGATACTCTGGAGTTCACATCTGAACGAAAAAGAATGTCTGTGGTCGTTAAAGATTGTCAGAATGGGAAGATTGTCCTCCTGTCAAAAGGAGCAGATGAAGCTATACTTCCTTATGCTTGTGCTGGCCAGCAAACAAGAACATTTATTGAAGCCGTGGATCAATATGCGCAACTTGGTCTCCGCACATTATGTCTGGCTTGGCGTGAACTAGAGGAAGATGAGTATCAAGAATGGGCTCTTATGTTTAAGGAGGCTAATAGCACACTGGTTGACAGGGAGTGGAGGTTAGCTGAAGTTTGTCAAAGATTAGAGCGCAATTTTGAAGTCCTTGGAGTTACTGCTATAGAAGATAGGCTACAGGATGGAGTCCCTGAAACAATTGAAACATTAAGAAGAGCAGGAATTAATTTCTGGATGCTGACTGGAGACAAGCAGAACACCGCCATTCAGATAGCTCTTCTATGCAACTTTATTTCACCAGAGCCCAAAGGGCAGTTATTGTTAATTGATGGTAAAACGGAGGATGAAGTTTGTAGAAGTTTGGAGAGAGTTGTTCTGACTATGAAGACCACAACCTCAGAACCCAAGGATGTTGCTTTTGTTGTTGATGGATGGGCTCTCGAAATTGCTCTCAAGAATTATCGTAGGGCGTTCACGGAATTAGCAATACTATCAAGAACCGCAATATGTTGTCGTGTGACTCCATCACAGAAGGCTCAGCTTGTGGAACTCTTAAAATCGTGTGATTATAGAACACTGGCAATTGGAGATGGTGGGAATGATGTGAGGATGATACAGCAAGCTGACATTGGAGTTGGCATTAGTGGAAGAGAAGGACTGCAGGCAGCTAGGGCAGCTGATTATAGTATTGGAAAGTTTAGGTTTCTCAAAAGATTGATTCTAGTTCACGGACGATACTCGTACAACCGTACAGCATTCTTGTCACAATATTCATTCTATAAATCCTTATTGATATGTTTTATCCAGATCTCTTTCTCTTTCATATCAGGTGTCTCTGGGACCAGTCTCTTTAATTCTGTTAGCTTGATGGCGTACAATGTTTTCTACACCAGTATTCCTGTATTAGTTAGCGTCCTAGACAAAGATCTCAGTGAAGAAACGGTGATGCAACATCCTCAGATTTTATTTTACTGCCAAGCTGGGAGGATTTTAAATCCCAGCACGTTTGCTGGATGGTTTGGTCGATCTCTATTTCATGCTGTAGTCGTGTTTGTAATTAGCATACATGCCTACGCTAATGAAAAGAGTGAAATGGTGGAGGTCTCGATGGTGGCACTATCTGGGTGCATTTGGTTACAAGCTTTTGTAGTGACTTTGGAGACCAATTCATTCACAATGTTGCAACATCTTGCTATATGGGGGAATTTAGCTGCTTTCTACGTAATCAATTGGATCTTCAGCGCCATTCCTTCATCTGGGATGTATACAATAATGTTCCGCTTATGTGGACAACCATCTTATTGGATAACCATATTTCTAATAGTAGGTGTGGGAATGGGCCCACTTTTAGCAATAAAATACTTCAGATATACATATAGACCAAGCAAAATCAACACTCTCCAACAAGCTGAACGTTTGGGTGGGCCGATTCTGTCGCTCAAAAACATTGAGCATCAGCCTCGGCCCATTGAGAAAGAAGTTTCTCCCCTCTCAATAACTCACCCCAAAAACCGAAATACAGTTTACGAACCTTTGTTATCAGACTCTCCAACTGCCACTCGAAGATCTCTTGCATCAGCTTCTTCCTTTGATTTCTTTCAGACACCGCCAAGTTATTCAAGAAATAAGGACAATTGA 3303 40.72 MKRYVYINDGEPSTDLYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKANEKEVWVVKQGTRKIIQAQDIHVGNLVWLRENDEVPSDLVLIGTSDPQGICYIETSALDGETDLKTRVIPSACMGIDFDLLNKIKGVIECPKPDKDIRRFDANIRLFPPFIDNDVCPLTIKNTILQSCYLRNTEWVCGVAVYTGNETKLGMSRGVPEPKLTAMDAMIDKLTGAIFVFQLVVVVVLGIAGNVWKDSEARKLWYVQHPEEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDYDMIDCETGIPSHATNTAISEDLGQVEFILTDKTGTLTENKMIFRRCCVSGIFYGNENGDALKDKKLLSAIASSSPDVIRFLTIMAICNTVVPTRSKSGNILYKAQSQDEDALVNAAAYLHMVFVNKNANILEIQFNGMLNRYELLDTLEFTSERKRMSVVVKDCQNGKIVLLSKGADEAILPYACAGQQTRTFIEAVDQYAQLGLRTLCLAWRELEEDEYQEWALMFKEANSTLVDREWRLAEVCQRLERNFEVLGVTAIEDRLQDGVPETIETLRRAGINFWMLTGDKQNTAIQIALLCNFISPEPKGQLLLIDGKTEDEVCRSLERVVLTMKTTTSEPKDVAFVVDGWALEIALKNYRRAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQISFSFISGVSGTSLFNSVSLMAYNVFYTSIPVLVSVLDKDLSEETVMQHPQILFYCQAGRILNPSTFAGWFGRSLFHAVVVFVISIHAYANEKSEMVEVSMVALSGCIWLQAFVVTLETNSFTMLQHLAIWGNLAAFYVINWIFSAIPSSGMYTIMFRLCGQPSYWITIFLIVGVGMGPLLAIKYFRYTYRPSKINTLQQAERLGGPILSLKNIEHQPRPIEKEVSPLSITHPKNRNTVYEPLLSDSPTATRRSLASASSFDFFQTPPSYSRNKDN 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2823072 2833145 - ClG42_07g0024200.10 Clacu07g0242 252840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0242 1100 Pfam Phospholipid-translocating P-type ATPase C-terminal 778 1017 IPR032630 -
Clacu07g0242 1100 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 2 1023 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Clacu07g0242 1100 Pfam E1-E2 ATPase 99 295 - -
Clacu07g0242 1100 SFLD C1.7: P-type atpase like 362 801 - -
Clacu07g0242 1100 Pfam haloacid dehalogenase-like hydrolase 591 764 - -
Clacu07g0242 1100 Gene3D - 448 589 IPR023299 GO:0000166(InterPro)
Clacu07g0242 1100 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Clacu07g0242 1100 SUPERFAMILY Calcium ATPase, transduction domain A 100 248 IPR008250 -
Clacu07g0242 1100 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Clacu07g0242 1100 NCBIfam phospholipid-translocating P-type ATPase 424 1023 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Clacu07g0242 1100 PRINTS P-type cation-transporting ATPase superfamily signature 628 638 - -
Clacu07g0242 1100 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Clacu07g0242 1100 PRINTS P-type cation-transporting ATPase superfamily signature 152 166 - -
Clacu07g0242 1100 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Clacu07g0242 1100 SFLD p-type atpase 362 801 IPR044492 -
Clacu07g0242 1100 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 573 IPR023299 GO:0000166(InterPro)
Clacu07g0242 1100 NCBIfam HAD-IC family P-type ATPase 717 834 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu07g0242 1100 Gene3D - 75 251 - -
Clacu07g0242 1100 SUPERFAMILY HAD-like 375 805 IPR036412 -
Clacu07g0242 1100 FunFam Phospholipid-transporting ATPase 602 789 - -
Clacu07g0242 1100 FunFam Phospholipid-transporting ATPase 75 251 - -
Clacu07g0242 1100 Pfam Cation transport ATPase (P-type) 435 533 - -
Clacu07g0242 1100 Gene3D - 602 790 IPR023214 -
Clacu07g0242 1100 FunFam Phospholipid-transporting ATPase 449 592 - -
Clacu07g0242 1100 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 1016 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0242 Clacu-Chr7:2823072 Clacu08g0999 Clacu-Chr8:20034903 1.60E-151 dispersed
Clacu07g0242 Clacu-Chr7:2823072 Clacu04g1201 Clacu-Chr4:26177087 1.80E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0242 K01530 - csv:101210900 2117.81