Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0249 ATGATTTCGAGATCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAGGAAGCGATTTCCGCGAGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGATGATGATCAGGCTTACAGTGTGACATCTGAAAACCCATCGTCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTACCTTTAAGAGCAAAGCGAAGGGAGGATGATAATACGTGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGCTTACCCGAAGATATGGAGGTTCTTTACGTTGGTTCGCTGAAAGTCGATATCCAACCAGAAGAGCAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTCGACCGCTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTGAACTCTGATATCATTGGATTTCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGTAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTATGGCAGGACGATTGGGATAAAGATAATGCCTGTTGGTATTCATATGAGTTGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCTAAGACGAGGGAACTCACACAACAATTTGCAGGGAAAACGGTGTTGCTTGGTGTCGACGATTTGGACATTTTCAAAGGCATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCGAAGTGGCAGGGAAAGGCTGTACTCATCCAAATTGTAAATCCTGCCAGAGGCAAGGGAAGAGATCTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTACGAGCCAATAGTACTTCTCGACAGGCACGTGCCAATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTCACTGCTGTTAGAGATGGCATGAACCTAACTCCTTATGAGTACGTTGTCTGTAGACAGGGAATATCCACCTTCCAAAAATGTTTAAACTTCAGCGGACCAAAAAAGAGCATGCTCGTCATATCCGAATTTATTGGATGTTCTCCATCACTGAGTGGAGCATTTCGTGTCAACCCATGGAATGTTGAAAGGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGTCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTATGTTGCTACACACGATGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCATCTTACAGTAGAGCTGAAAGTCGGGCTATTCTGTTGGACTATGATGGCACTGTGATGCCTCAAAACTCCATAAATAAGTCACCGAGTGAGCAGGTTATCTCTATCCTTAACATCCTTTGTGCAGATGCAAAAAATGTTGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGCAGTCGCAAAATGAGGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCAGATTGCCGAACCTGTTATGAAATTGTATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTCTGGCAGTATCGAGATGCAGATCCTGGTTTCGGATCATCCCAGGCAAAGGAAATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTAGCAGTCAAAAGTGGCCAGTTTATCGTAGAAGTGAAACCACAGGGGGTTACCAAAGGGCTAGTGGCTGAAAAGATCTTTTCATCAATGGTGGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGCATCGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGCGTTGTCCAGTAATATTCTTTCTCCAACGACATCGGTTTTTGCCTGCACTGTTGGACAGAAGCCAAGCAAAGCCAAATATTATTTAGATGACACAGCTGAAGTAATAAGTATGCTTGAATACCTGGCTGAAGCGTCTAGCCCATTGCCATCCTCGGACGATGAAGAAGGTGAAAATGCTTCTTGA 2571 42.4 MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNTWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPEEQDEVSQILLEKFRCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSWIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTFQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVERTAEALNEAISMSDSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSEQVISILNILCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMVEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2868649 2871887 - ClG42_07g0024900.10 Clacu07g0249 252847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0249 856 CDD HAD_TPP 591 830 - -
Clacu07g0249 856 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Clacu07g0249 856 Gene3D Glycogen Phosphorylase B; 53 314 - -
Clacu07g0249 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Clacu07g0249 856 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
Clacu07g0249 856 NCBIfam trehalose-phosphatase 588 838 IPR003337 GO:0005992(InterPro)
Clacu07g0249 856 SUPERFAMILY HAD-like 590 838 IPR036412 -
Clacu07g0249 856 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 850 - -
Clacu07g0249 856 NCBIfam HAD-IIB family hydrolase 592 796 IPR006379 -
Clacu07g0249 856 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
Clacu07g0249 856 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Clacu07g0249 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Clacu07g0249 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Clacu07g0249 856 FunFam Trehalose-6-phosphate synthase 2 673 752 - -
Clacu07g0249 856 Gene3D Glycogen Phosphorylase B; 315 527 - -
Clacu07g0249 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Clacu07g0249 856 Gene3D - 589 690 IPR023214 -
Clacu07g0249 856 Gene3D - 718 850 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0249 Clacu-Chr7:2868649 Clacu11g1911 Clacu-Chr11:30076960 5.50E-120 dispersed
Clacu10g0143 Clacu-Chr10:1744888 Clacu07g0249 Clacu-Chr7:2868649 0.00E+00 transposed
Clacu01g2471 Clacu-Chr1:35167393 Clacu07g0249 Clacu-Chr7:2868649 0.00E+00 wgd
Clacu03g0728 Clacu-Chr3:8096689 Clacu07g0249 Clacu-Chr7:2868649 1.20E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0249 K16055 - csv:101209914 1704.11