Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0249 ATGATTTCGAGATCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAGGAAGCGATTTCCGCGAGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGATGATGATCAGGCTTACAGTGTGACATCTGAAAACCCATCGTCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTACCTTTAAGAGCAAAGCGAAGGGAGGATGATAATACGTGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGCTTACCCGAAGATATGGAGGTTCTTTACGTTGGTTCGCTGAAAGTCGATATCCAACCAGAAGAGCAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTCGACCGCTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTGAACTCTGATATCATTGGATTTCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGTAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTATGGCAGGACGATTGGGATAAAGATAATGCCTGTTGGTATTCATATGAGTTGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCTAAGACGAGGGAACTCACACAACAATTTGCAGGGAAAACGGTGTTGCTTGGTGTCGACGATTTGGACATTTTCAAAGGCATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCGAAGTGGCAGGGAAAGGCTGTACTCATCCAAATTGTAAATCCTGCCAGAGGCAAGGGAAGAGATCTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTACGAGCCAATAGTACTTCTCGACAGGCACGTGCCAATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTCACTGCTGTTAGAGATGGCATGAACCTAACTCCTTATGAGTACGTTGTCTGTAGACAGGGAATATCCACCTTCCAAAAATGTTTAAACTTCAGCGGACCAAAAAAGAGCATGCTCGTCATATCCGAATTTATTGGATGTTCTCCATCACTGAGTGGAGCATTTCGTGTCAACCCATGGAATGTTGAAAGGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGTCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTATGTTGCTACACACGATGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCATCTTACAGTAGAGCTGAAAGTCGGGCTATTCTGTTGGACTATGATGGCACTGTGATGCCTCAAAACTCCATAAATAAGTCACCGAGTGAGCAGGTTATCTCTATCCTTAACATCCTTTGTGCAGATGCAAAAAATGTTGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGCAGTCGCAAAATGAGGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCAGATTGCCGAACCTGTTATGAAATTGTATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTCTGGCAGTATCGAGATGCAGATCCTGGTTTCGGATCATCCCAGGCAAAGGAAATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTAGCAGTCAAAAGTGGCCAGTTTATCGTAGAAGTGAAACCACAGGGGGTTACCAAAGGGCTAGTGGCTGAAAAGATCTTTTCATCAATGGTGGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGCATCGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGCGTTGTCCAGTAATATTCTTTCTCCAACGACATCGGTTTTTGCCTGCACTGTTGGACAGAAGCCAAGCAAAGCCAAATATTATTTAGATGACACAGCTGAAGTAATAAGTATGCTTGAATACCTGGCTGAAGCGTCTAGCCCATTGCCATCCTCGGACGATGAAGAAGGTGAAAATGCTTCTTGA 2571 42.4 MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNTWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPEEQDEVSQILLEKFRCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSWIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTFQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVERTAEALNEAISMSDSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSEQVISILNILCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMVEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2868649 2871887 - ClG42_07g0024900.10 Clacu07g0249 252847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0249 856 CDD HAD_TPP 591 830 - -
Clacu07g0249 856 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Clacu07g0249 856 Gene3D Glycogen Phosphorylase B; 53 314 - -
Clacu07g0249 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Clacu07g0249 856 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
Clacu07g0249 856 NCBIfam trehalose-phosphatase 588 838 IPR003337 GO:0005992(InterPro)
Clacu07g0249 856 SUPERFAMILY HAD-like 590 838 IPR036412 -
Clacu07g0249 856 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 850 - -
Clacu07g0249 856 NCBIfam HAD-IIB family hydrolase 592 796 IPR006379 -
Clacu07g0249 856 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
Clacu07g0249 856 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Clacu07g0249 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Clacu07g0249 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Clacu07g0249 856 FunFam Trehalose-6-phosphate synthase 2 673 752 - -
Clacu07g0249 856 Gene3D Glycogen Phosphorylase B; 315 527 - -
Clacu07g0249 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Clacu07g0249 856 Gene3D - 589 690 IPR023214 -
Clacu07g0249 856 Gene3D - 718 850 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0249 K16055 - - csv:101209914 1704.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0249 Clacu-Chr7:2868649 Clacu11g1911 Clacu-Chr11:30076960 5.50E-120 dispersed
Clacu10g0143 Clacu-Chr10:1744888 Clacu07g0249 Clacu-Chr7:2868649 0.00E+00 transposed
Clacu01g2471 Clacu-Chr1:35167393 Clacu07g0249 Clacu-Chr7:2868649 0.00E+00 wgd
Clacu03g0728 Clacu-Chr3:8096689 Clacu07g0249 Clacu-Chr7:2868649 1.20E-120 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu01g0187 . 21 575 Trehalose Biosynthesis Gene Families AT4G24040 58.3 5.9e-196 681.0
Clacu07g0249 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1374.0
Clacu01g2471 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1321.2
Clacu10g0143 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Clacu05g2718 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1092.0
Clacu06g1795 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.6e-303 1038.1
Clacu11g1911 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 2.8e-249 858.2
Clacu03g0728 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.6 9.7e-242 833.2
Clacu05g2718 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1346.6
Clacu06g1795 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1211.1
Clacu10g0143 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Clacu07g0249 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1094.7
Clacu01g2471 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1092.4
Clacu05g2718 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.1 0.0e+00 1328.5
Clacu06g1795 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1233.4
Clacu10g0143 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Clacu07g0249 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.1 1.8e-312 1068.5
Clacu01g2471 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 6.8e-312 1066.6
Clacu10g0143 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Clacu01g2471 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1143.3
Clacu07g0249 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1138.3
Clacu05g2718 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Clacu06g1795 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Clacu05g2718 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Clacu06g1795 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Clacu07g0249 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.7 4.8e-291 997.3
Clacu01g2471 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 5.3e-290 993.8
Clacu10g0143 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 6.7e-285 976.9
Clacu11g1911 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1482.6
Clacu03g0728 . 58 931 Trehalose Biosynthesis Gene Families AT1G78580 75.9 0.0e+00 1347.0
Clacu05g2718 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.1 7.8e-308 1053.1
Clacu06g1795 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.2e-301 1031.2
Clacu10g0143 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 1.9e-298 1021.9
Clacu01g2471 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 4.3e-298 1020.8
Clacu07g0249 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.3 3.0e-291 998.0
Clacu10g0143 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Clacu01g2471 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1161.0
Clacu07g0249 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1157.5
Clacu05g2718 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1137.9
Clacu06g1795 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Clacu11g1911 . 93 926 Trehalose Biosynthesis Gene Families AT4G27550 62.5 1.9e-305 1045.0
Clacu03g0728 . 91 925 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.3e-288 986.9
Clacu11g1911 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1482.6
Clacu03g0728 . 58 931 Trehalose Biosynthesis Gene Families AT1G78580 75.9 0.0e+00 1347.0
Clacu11g1911 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 2.8e-249 858.2
Clacu03g0728 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.6 9.7e-242 833.2
Clacu11g1911 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 4.0e-194 675.2
Clacu03g0728 . 92 610 Trehalose Biosynthesis Gene Families AT1G17000 61.5 2.7e-190 662.5
Clacu11g1911 . 93 926 Trehalose Biosynthesis Gene Families AT4G27550 62.5 1.9e-305 1045.0
Clacu03g0728 . 91 925 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.3e-288 986.9
Clacu10g0143 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Clacu01g2471 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1161.0
Clacu07g0249 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1157.5
Clacu05g2718 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1137.9
Clacu06g1795 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Clacu10g0143 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Clacu01g2471 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1143.3
Clacu07g0249 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1138.3
Clacu05g2718 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Clacu06g1795 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Clacu07g0249 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1374.0
Clacu01g2471 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1321.2
Clacu10g0143 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Clacu05g2718 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1092.0
Clacu06g1795 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.6e-303 1038.1
Clacu05g2718 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Clacu06g1795 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Clacu07g0249 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.7 4.8e-291 997.3
Clacu01g2471 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 5.3e-290 993.8
Clacu10g0143 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 6.7e-285 976.9
Clacu05g2718 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1346.6
Clacu06g1795 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1211.1
Clacu10g0143 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Clacu07g0249 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1094.7
Clacu01g2471 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1092.4
Clacu05g2718 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.1 0.0e+00 1328.5
Clacu06g1795 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1233.4
Clacu10g0143 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Clacu07g0249 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.1 1.8e-312 1068.5
Clacu01g2471 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 6.8e-312 1066.6
Clacu05g2718 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.1 7.8e-308 1053.1
Clacu06g1795 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.2e-301 1031.2
Clacu10g0143 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 1.9e-298 1021.9
Clacu01g2471 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 4.3e-298 1020.8
Clacu07g0249 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.3 3.0e-291 998.0
Clacu01g0187 . 21 575 Trehalose Biosynthesis Gene Families AT4G24040 58.3 5.9e-196 681.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73