Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0252 ATGGACCGCCGTGTTCGTACAAACCCATTTGTCTCCGAGCAAGAAGATCCTGAAGCCACGTCGGATGACGGCTCACCGGAATCACCCTCCGACGGCAATGACTCAAAATCCGCCTCCGCCGGCCCACCTCCCAAAAAGAGTAGAAGGGGAGTGCAGAAGAGAGTGGTGTCCGTACCGATCGGTGACGTGGAAGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATCCATGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAAGGCTCTCCTTATCCCAGGGGATATTATCGATGTAGTAGCTCCAAGGGCTGCCCAGCAAGAAAGCAAGTAGAAAGAAGCCGTGTGGACCCCACCAAGCTCGTTATTACCTACGCTTTCGACCACAATCACCAACTCCCGGCCACCAAATCTCACCACCACCACCACAATTCCTCCCCATCCTCCGCCGCGATCGCCGCCGCATCCACCGCAGCCGACTCTTCGTCCCCGGGGAGCACTACGACGTCGTCCTCCACTTCCTCCGGCGATAACACGAACGCCGCTCCATCGTCGCCGGCAGCGGCGGCGAAGTTCGAGGAGGCGGCTGCGGTTTTCGCAAGTCAGCCGGAACTGGAACTCGGCGGCGACTCGCTGATGATAAAACCATGCATCGGGGATTTCGGATGGTTGGCTGACGTGGCGTACGACAGAATCCTGGAGGGCCCGATTTGCGGGGGAGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCCACTACAGGTGATGACGAGGAGGAGTCGTTATTTGCGGATCTTGGGGAATTACCCGAAGGCTCTGTTGTTTTCGGCCGACGACGACCGGTCCAACCGGACGGACCAAACCGGACATGTGGCAGAGTTTTAGACTGCTAG 903 57.48 MDRRVRTNPFVSEQEDPEATSDDGSPESPSDGNDSKSASAGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDPWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPATKSHHHHHNSSPSSAAIAAASTAADSSSPGSTTTSSSTSSGDNTNAAPSSPAAAAKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWLADVAYDRILEGPICGGGDIFDDADVMVLSTTGDDEEESLFADLGELPEGSVVFGRRRPVQPDGPNRTCGRVLDC 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2882343 2884959 - ClG42_07g0025200.10 Clacu07g0252 252850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0252 300 Gene3D WRKY domain 63 137 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0252 300 ProSiteProfiles WRKY domain profile. 76 136 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0252 300 MobiDBLite consensus disorder prediction 23 37 - -
Clacu07g0252 300 MobiDBLite consensus disorder prediction 147 187 - -
Clacu07g0252 300 Pfam WRKY DNA -binding domain 77 134 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0252 300 MobiDBLite consensus disorder prediction 137 189 - -
Clacu07g0252 300 FunFam WRKY transcription factor 65 62 136 - -
Clacu07g0252 300 SUPERFAMILY WRKY DNA-binding domain 71 136 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0252 300 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 24 200 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu07g0252 300 SMART WRKY_cls 75 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0252 300 MobiDBLite consensus disorder prediction 1 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0061 Clacu-Chr7:970766 Clacu07g0252 Clacu-Chr7:2882343 5.50E-23 dispersed
Clacu07g0252 Clacu-Chr7:2882343 Clacu10g1144 Clacu-Chr10:24004320 6.10E-26 dispersed
Clacu03g0747 Clacu-Chr3:8311596 Clacu07g0252 Clacu-Chr7:2882343 7.90E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47990 PF03106 WRKY 2.10E-24 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0252 - - - 0.0