Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0258 ATGGCGTCCATTATTATTTCTCATCTTTTCATTGCTTTTTCCCTGTTAGCCTTCTCAGCCAATGCTCAGCTCTCATCCAGCTTCTACTCAAAAAGCTGTCCCAGACTCCAATCAATTGTTCGTGCTGGTATGACCAAAGCTGTTAACAAAGAAAAGCGTATTGGAGCTTCGATCCTTCGCTTGTTTTTCCACGACTGCTTCGTAAATGGGTGCGATGGTTCTATCTTGTTGGATGATACTTCAACATTTACGGGTGAAAAAAATGCATTTCCAAATAGAAACTCAGCTAGAGGCTTCGAAGTAATTGATGACATTAAAACTCAAGTTGAAGCTGCTTGCAATGCCACCGTTTCTTGTGCTGATATTCTTGCTCTTGCCACTCGTGATGGGGTCGTTCTGCTCGGAGGGCCAAATTGGGTTGTACCACTCGGTCGAAGGGACTCAAGGACAGCGAGCGAGAGCGGAGCGAACAGCAACCTTCCGGGACCCGCCTCTGACCTGTCGACACTCATCTCACTATTTGCCGCTCAAGGCCTCAACGCCCGCGACATGACAGCCCTCTCGGGCGCTCACACCATAGGCAATGGCCAATGTCGTTTCTTCCGAACTCGCATCTACAACGAAACCAACATCGATCCCACCTTTGCCACCCAGCGGCAAGAAAATTGTCCGTTCAGCGGCGGCGACTCGAACTTGGCCCCTCTTGACTCAACCAACACTATTTTTGACAACAGATATTATGTAGACCTAACTAATAAGCGTGGCCTGTTTCATTCGGACCAACAACTCTTCAACGGCGGTTCACAAGATGCGTTGGTTCGGACCTACAGTAAAAGTCCTACTGTCTTTAAATCGGATTTTGTAAATGCGATGATCAAGATGGGGAATCTTCGTCCAGCGAGTGGAACCCCCACTGAGATTAGAAAAAATTCGATGGTTTATGAATCGCGTTTGATCTCGCGGTTTGTGGAGGGAAGCGATCTTGTTGCTTTCATAATGTTTATGGTTTCTGATCGGTCTGTTTTTGATTTAGTGCTTCGCAATATTATAATGTCATTGACAGCTCAATCTGACACGACCTGCAGTTACTTGGTTAGGCTGTGTTCTGTCTTGAATTTGCTTGATATGTTTTATTGTCTTAAAGAGAATATAATTTCTCCATTGGATGATCAATTCTTGATGCTCGAGTACAAGCATTTACCTGAAATGTCATCGACTACTGTAGAAAGTAAGGACGCAGTAACTGGTCACATAATCTCCACTACTATTGGAGGGGAAAATGGCGAGCAAAAACAGACTATTAGCTACATGGCAGAACGTGTTGTTGGTTCTGGATCGTTTGGAATTGTTTTCCAGGCTAAATGCTTGGAAACCGGGGAGACTTTTGCAATAAAGAAAGTCTTACAGGACAGGCGTTATAAAAATCGTGAGCTACAGTTGATGCGCTTGATGGATCATCCAAATGTTGTTTTCTTGAAGCATTGTTTTTTCTCTACAACTAGTAAAGATGAACTCTTCTTAAATCTGGTAATGGAATACGTTCCCGAGACTATGTATCGAGTACTGAAGCACTACTGCAGTATAAACCAGAGGATGCCACTCATCTATGTGAAACTTTACACTTATCAAATCTTCAGGGGGCTAGCTTATATCCACACTGTTCCTGGAGTTTGTCATCGCGATGTAAAGCCTCATAATCTTTTGGTTGATCCTGTCACACATCAGGTCAAGCTTTGTGATTTTGGTAGTGCAAAAGTCCTGGTTAAAGGTGAGGCAAACATCTCTTACATATGCTCCCGGTACTATCGAGCTCCGGAGCTCATATTTGGTGCAACAGAGTATTCTACATCCATCGACATATGGTCAGCTGGTTGTGTTCTTGCAGAGCTGCTTCTAGGCCAGCCATTGTTCCCTGGTGAAAGTGCCGTAGATCAACTGGTTGAAATAATCAAGGTTCTTGGCACTCCAACTCGAGAAGAAATTCGATGCATGAATCCAAATTATACAGATTTTAGGTTTCCTCAGATTAAAGCCCATCCGTGGCACAAGGTCTTCCACAAACGAATGCCACCTGAAGCTATAGATCTTACTTCAAGGCTTCTTCAATATTCGCCTGGTCTCCGGTGCACTGCACTTGAAGCATGTGCGCATCCTTTCTTTGATGAGCTTCGGGAGCCTAATGCCCGCCTTCCCGATGGTCGTCAGTTGCCCCCACTTTTCAACTTTAAACAGGAACTTTCAGGAGCATCACCTGATCTGATAAAGAGGCTCATACCAGAGCATGTTCGGCGGCAGACCGGACTTTCATTCCCCCATCATGCAGTTACATAG 2331 44.74 MASIIISHLFIAFSLLAFSANAQLSSSFYSKSCPRLQSIVRAGMTKAVNKEKRIGASILRLFFHDCFVNGCDGSILLDDTSTFTGEKNAFPNRNSARGFEVIDDIKTQVEAACNATVSCADILALATRDGVVLLGGPNWVVPLGRRDSRTASESGANSNLPGPASDLSTLISLFAAQGLNARDMTALSGAHTIGNGQCRFFRTRIYNETNIDPTFATQRQENCPFSGGDSNLAPLDSTNTIFDNRYYVDLTNKRGLFHSDQQLFNGGSQDALVRTYSKSPTVFKSDFVNAMIKMGNLRPASGTPTEIRKNSMVYESRLISRFVEGSDLVAFIMFMVSDRSVFDLVLRNIIMSLTAQSDTTCSYLVRLCSVLNLLDMFYCLKENIISPLDDQFLMLEYKHLPEMSSTTVESKDAVTGHIISTTIGGENGEQKQTISYMAERVVGSGSFGIVFQAKCLETGETFAIKKVLQDRRYKNRELQLMRLMDHPNVVFLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYCSINQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPHNLLVDPVTHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYSTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLTSRLLQYSPGLRCTALEACAHPFFDELREPNARLPDGRQLPPLFNFKQELSGASPDLIKRLIPEHVRRQTGLSFPHHAVT 776
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 2941803 2951481 - ClG42_07g0025800.10 Clacu07g0258 252856
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0258 776 Pfam Protein kinase domain 436 720 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0258 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 557 569 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g0258 776 FunFam Peroxidase 27 166 - -
Clacu07g0258 776 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 PRINTS Plant peroxidase signature 289 302 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 SUPERFAMILY Heme-dependent peroxidases 23 313 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 Gene3D Peroxidase, domain 2 161 294 - -
Clacu07g0258 776 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Clacu07g0258 776 FunFam Shaggy-related protein kinase kappa 516 763 - -
Clacu07g0258 776 Gene3D - 28 310 - -
Clacu07g0258 776 Gene3D Transferase(Phosphotransferase) domain 1 516 763 - -
Clacu07g0258 776 Pfam Peroxidase 40 278 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 ProSiteProfiles Protein kinase domain profile. 436 720 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0258 776 Gene3D Phosphorylase Kinase; domain 1 421 515 - -
Clacu07g0258 776 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Clacu07g0258 776 SMART serkin_6 436 720 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0258 776 CDD STKc_GSK3 431 723 IPR039192 -
Clacu07g0258 776 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 FunFam Glycogen synthase kinase-3 beta 420 515 - -
Clacu07g0258 776 ProSiteProfiles Plant heme peroxidase family profile. 23 315 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu07g0258 776 FunFam Peroxidase 161 294 - -
Clacu07g0258 776 CDD secretory_peroxidase 23 310 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu07g0258 776 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 405 764 IPR050591 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu07g0258 776 SUPERFAMILY Protein kinase-like (PK-like) 435 743 IPR011009 -
Clacu07g0258 776 ProSitePatterns Protein kinases ATP-binding region signature. 442 466 IPR017441 GO:0005524(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1133 Clacu-Chr4:25595608 Clacu07g0258 Clacu-Chr7:2941803 7.20E-20 dispersed
Clacu04g1134 Clacu-Chr4:25595897 Clacu07g0258 Clacu-Chr7:2941803 2.50E-63 dispersed
Clacu07g0258 Clacu-Chr7:2941803 Clacu10g1394 Clacu-Chr10:27072641 1.10E-180 dispersed
Clacu01g2461 Clacu-Chr1:35084726 Clacu07g0258 Clacu-Chr7:2941803 3.90E-193 wgd
Clacu02g1831 Clacu-Chr2:31795750 Clacu07g0258 Clacu-Chr7:2941803 1.40E-201 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73679 PF00069 Pkinase 1.70E-61 CL0016 Clacu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0258 K14502 - cit:102626148 713.761