Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0259 ATGGAACTTGAAGACGACTACCGAAGAAAACAGCAACTCCTTCTTCTGGTAATCGTTGTACTTGCTTCTCTCGCTCTCGTTTCTTTGCTCGTCGCTTTCAGCTATTACTGCTATATCAGCAATAAGGTCTCCAAGCGCCTCAAGATCCGCAAAAGGGCTGATCTTGAAGATGGAGGTAGTTTTGAAAATGGTAAAGAATTTTCCACTGAGAAAGGTCTCCAATTGTTCACCTTCAAGCAGCTACACTCCGCAACAGGTGGTTTTAGCAAGTCAAATGTGGTTGGGCATGGTAGCTTTGGGCATGTATATCGGGGAGTCCTGAACGATGGGAGAAAGGTTGCGGTTAAGCTTATGGATCAAGCAGGGAAGCAGGGAGAGGATGAATTTAAAGTGGAGGTGGAATTGTTAAGTCGCCTTCATTCACCATATTTGTTGGCATTGCTTGGGTATTGCTCAGATAACAATCATAAATTACTCGTATACGAGTTCATGGCAAATGGCGGTCTGCAAGAACATCTATACCCTATTAGCAGTTCAAATTCAATCAGCATTAAGTTGGACTGGGAAACACGACTGAGAGTTGCCCTCGAAGCTGCCAAAGGTTTGGAGTATTTACATGAACACGTCTGTCCCCCGGTAATTCATAGGGATTTCAAGAGCAGCAATGTCCTGCTGGACAAAAACCTTCATGCTAAGGTTTCTGATTTTGGATTGGCAAAGATCGGCTCAGACAAAGCCGGGGGTCACGTCTCCACTCGAGTTTTAGGGACAAAAGGATATGTTGCCCCTGAGTATGCGCTAACAGGGCATTTAACAACAAAGTCAGATGTCTATAGTTATGGGGTTGTCCTCTTGGAGCTGCTCACTGGCAGAGTTCCAGTTGATATGAAGAGAACTCCTGGGGAAGCTTCCCTTGTTTCTTGGGCTTTGCCGAGGCTGACTGATAGGGAGAGAGTGATGCATATAATGGACCCTGCATTGGAGGGTCAGTACTCCATGAAAGATGTTGTTCAAGTGGCAGCAATTGCAGCAATGTGTGTTCAACCGGAGGCGGATTACAGGCCGCTGATGGCCGATGTTGTCCAGTCACTGGTTCCGCTTGTGAGAAATTACCAGACTTCAAAGATCGGTAGCAGTTCTAGTTCCAGCGCTACCAAGTCACCTGCAGCGCACGACAATGCTAGTTCGGGAGACTGA 1197 46.53 MELEDDYRRKQQLLLLVIVVLASLALVSLLVAFSYYCYISNKVSKRLKIRKRADLEDGGSFENGKEFSTEKGLQLFTFKQLHSATGGFSKSNVVGHGSFGHVYRGVLNDGRKVAVKLMDQAGKQGEDEFKVEVELLSRLHSPYLLALLGYCSDNNHKLLVYEFMANGGLQEHLYPISSSNSISIKLDWETRLRVALEAAKGLEYLHEHVCPPVIHRDFKSSNVLLDKNLHAKVSDFGLAKIGSDKAGGHVSTRVLGTKGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRTPGEASLVSWALPRLTDRERVMHIMDPALEGQYSMKDVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVRNYQTSKIGSSSSSSATKSPAAHDNASSGD 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2966479 2969406 - ClG42_07g0025900.10 Clacu07g0259 252857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0259 398 Gene3D Phosphorylase Kinase; domain 1 55 163 - -
Clacu07g0259 398 FunFam Serine/threonine-protein kinase PBS1 57 163 - -
Clacu07g0259 398 SUPERFAMILY Protein kinase-like (PK-like) 66 364 IPR011009 -
Clacu07g0259 398 FunFam Receptor-like serine/threonine-protein kinase ALE2 164 384 - -
Clacu07g0259 398 Gene3D Transferase(Phosphotransferase) domain 1 164 388 - -
Clacu07g0259 398 PANTHER OS01G0750732 PROTEIN 19 389 IPR050885 -
Clacu07g0259 398 CDD STKc_IRAK 94 367 - -
Clacu07g0259 398 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524(InterPro)
Clacu07g0259 398 ProSiteProfiles Protein kinase domain profile. 88 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0259 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g0259 398 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g0259 398 MobiDBLite consensus disorder prediction 375 398 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1718 Clacu-Chr3:30989784 Clacu07g0259 Clacu-Chr7:2966479 5.00E-114 dispersed
Clacu07g0259 Clacu-Chr7:2966479 Clacu10g1148 Clacu-Chr10:24024521 1.70E-87 dispersed
Clacu09g0336 Clacu-Chr9:2868683 Clacu07g0259 Clacu-Chr7:2966479 1.40E-39 dispersed
Clacu03g0762 Clacu-Chr3:8484516 Clacu07g0259 Clacu-Chr7:2966479 1.30E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73680 PF07714 PK_Tyr_Ser-Thr 1.40E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0259 - - - 0.0