Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0270 ATGGCTTCCACTAAAGAACGCGAGAACTTCGTTTACATCGCTAAGCTCGCCGAGCAGGCCGAGCGTTATGATGAAATGGTGGATGCAATGAAGAATGTTGCAAAGCTTGATGTCGAATTGACAGTTGAGGAAAGAAACTTACTTTCTGTTGGGTACAAGAATGTGGTTGGTGCACGGAGAGCCTCATGGAGAATCTTATCATCAATAGAGCAGAAAGAAGAAGCGAAAGGAAATGAAACAAATGCTAAACGCATCAAAGAATACAGACAAAAGGTTGAATCAGAGCTCTCTGGTATTTGCAATGATATCATGACAGTGATTGACGAGCACCTAATTCCGTCGGCTTCAGCTGGGGAATCAACAGTATTCTACTATAAGATGAAAGGAGACTATTATCGTTACCTTGCAGAATTTAAATCTGGTAATGAGAAGAAAGATGCAGCTGATCAATCGATGAAAGCATATGAGGCTGCAACCAGCTCAGCCGAATCTGAGTTACCCCCTACACATCCTATCCGCTTGGGGTTGGCATTAAATTTCTCTGTCTTCTATTATGAAATCTTGAATTCACCTGAAAGGGCCTGCCACCTTGCAAAGCAAGCTTTTGATGAAGCCATTTCCGAACTTGACACCCTGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAGCTTCTTAGGGACAACCTTACATTATGGACTTCTGACATCCCAGAAGATGGAGATGATGCCCAAAAGATCAATGGCACTGCCAAGGTTTCTGGTGGTGACGATGCCGAGTGA 786 43.26 MASTKERENFVYIAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNETNAKRIKEYRQKVESELSGICNDIMTVIDEHLIPSASAGESTVFYYKMKGDYYRYLAEFKSGNEKKDAADQSMKAYEAATSSAESELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDDAQKINGTAKVSGGDDAE 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3060643 3063833 + ClG42_07g0027000.10 Clacu07g0270 252868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0270 261 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Clacu07g0270 261 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Clacu07g0270 261 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Clacu07g0270 261 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Clacu07g0270 261 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Clacu07g0270 261 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Clacu07g0270 261 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Clacu07g0270 261 FunFam 14-3-3 protein epsilon 2 248 - -
Clacu07g0270 261 Coils Coil 195 215 - -
Clacu07g0270 261 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Clacu07g0270 261 Pfam 14-3-3 protein 14 235 IPR023410 -
Clacu07g0270 261 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Clacu07g0270 261 MobiDBLite consensus disorder prediction 239 261 - -
Clacu07g0270 261 PIRSF 14-3-3 1 247 IPR000308 -
Clacu07g0270 261 PANTHER 14-3-3 PROTEIN 6 240 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Clacu07g0270 261 Coils Coil 13 33 - -
Clacu07g0270 261 SMART 1433_4 7 248 IPR023410 -
Clacu07g0270 261 Gene3D - 1 249 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0270 Clacu-Chr7:3060643 Clacu08g1197 Clacu-Chr8:21916373 8.60E-109 dispersed
Clacu07g0270 Clacu-Chr7:3060643 Clacu08g1267 Clacu-Chr8:22633043 5.40E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0270 K06630 - csv:101208446 500.36