Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0278 ATGGAGGAATCTCTTCTTGGAGGAGGTGGAGAAAGTAGCAGTAGCTCCAGCTCTCGACGTCAGATTCCGCATGTCAGGTTCAGGCGCCGCTCCGACGCCATCGCTTATGGCTCTGCCTATCAAAGAGCAGCTGCTCTTGTGGATCTGGCTGAAGATGGCATTGGTATACCTGAGAAAATTCTTGATCAGTCGAACTTTCAGAGTGCTGCAAAGCTCTACTTCATTTTTATAAAATTTGATTTGATTTGGTCCTTAAATTTCTTTGCGCTGATAGTCCTAAATTTCTTTGAGAAACCATTGTGGTGCTCCAAATATGATACACATTCTTGCAACGACAGGGAGTATTTCTTTCTTGGGCAGTTGCCGTACTTAACAGCTGTTGAATCTCTTATATATGAGGCTGTGACTCTCATAATACTCATGATACACACTTTTTTCCCAATTTCATATGAAGGTGCCCAGCTTTATTGGAAAAATATCTTGAATCAGTTGAAGGTAATTTGCATAACTATTCTGGTTGCCGATTTTCTCGTTTATATGCTATATTTGTCGCCAGTGGCCTTTGATTATCTTCCAGTCAGAGTTGCACCATATATTAGAGTCGTCTTTTTCATCATGAATATCAGGCATCTACGGGAGAGCATCATTATCCTGGCTGGAATGCTTGGCACATACTTGAATGTCATGGCTCTATGGCTTTTGTTTCTTCTGTTTTCCAGCTGGTTGGCATATGTTATTTTTGAGGATACACAGCAGGGGAAATTAATATTTACTTCTTTTGGAGCCACATTATATCAAATGTTTATTTTGTTCACAACATCCAATAATCCGGATGTTTGGATACCTGCCTACAAGGCGTCTCGTTGGTATTGCCTCTTTTTTGTTCTTTACGTGCTGTTGGGTGTTTACTTCGTTACAAATTTGATTCTTGCTGTTGTATACGATAGCTTTAAGAGTCAGCTTGCTAAACAAATTTCTGAGATGGATCGCTTGAGGAAAAGTATATTGGCCAAAGCATTTAGTCTCATGGATACTAATAACGTTGGGTTTATCAATAAAGAGCAGTGCCTTATACTTCTTGAAGAACTCAACAGATACAGGACATTGCCAAAAATATCAAGGGACGATTATGAGTTAATATTTGATGAGCTGGATGACAGTCGTGATTTTAAGATTAATATGAATGAGTTCGATGATCTTTGCAATGCTATAGCCTTGAAGTTCCAGAAGGAGGACATTCCTTCATGGTTTGAAGGGTATCCTTCGATCTACCATTCAGTTTTTTCAAAAAAGTTGAAAGCATTTGTGCGGAGCCCCACATTTGGATATGCTGTATCTTTTATCCTCATACTGAACCTGATTGCTGTTATTATTGAAACAACACTCGATATAGAAAACAATGTGGGTCAGAAAGCATGGCAAGAACTTGAGTTTGTATTTGGTTGGATATATGTAGTTGAAATGGCTCTAAAAATCTACGCGTTTGGGTTTTTGAATTATTGGAGAGATGGTCAAAATCAATTTGATTTCCTTGTCACTTGGATTATAGTGATTGGGGAAACTATAACTTTTGTGGCACCTAGTGGATTGACTTTTCTTTCCAATGGAGAATGGATTCGGTACCTTCTGATAGCAAGAATGTTACGCCTCATAAGGCTCCTAATGCATGTCCGGCAATATCGAGCATTTCTTGCTACCTTCCTAACTCTCATCCCCAGTTTGATGCCATATCTAGGGACTATTTTCTGTGTCCTCTGTCTTTATTGCACTCTTGGCGTGCAGGTCTTTGGAGGCATTGTCAATGCTGGAAATCCCACTTTGTCTAAGACTGATCTGAATGATGATGACTACCTACTTTTCAATTTCAACGACTATCCTAATGGCATGGTGACCCTGTTCAATTTGCTAGTCATGGGAAACTGGCAAGACTGGATGCAGAGCTACAAGGAATTAACCGGAAGTATTTGGAGCCTCGTTTATTTTATCAGTTTCTACCTAATAACCGTTTTGCTGCTCTTAAATCTGGTTGTAGCTTTTGTCTTGGAGGCATTCTTTGCTGAATTGGATATTGAATCTTCAGAAAATGGTGAAGAACAGGATCAGGATGGAGATAGTAGAAAGGATCGTCGACGTTTCGTAGGCACTAAATCTCGGAGCCGCAAATCCTGTTTCTTTTCCAGATAA 2184 39.7 MEESLLGGGGESSSSSSSRRQIPHVRFRRRSDAIAYGSAYQRAAALVDLAEDGIGIPEKILDQSNFQSAAKLYFIFIKFDLIWSLNFFALIVLNFFEKPLWCSKYDTHSCNDREYFFLGQLPYLTAVESLIYEAVTLIILMIHTFFPISYEGAQLYWKNILNQLKVICITILVADFLVYMLYLSPVAFDYLPVRVAPYIRVVFFIMNIRHLRESIIILAGMLGTYLNVMALWLLFLLFSSWLAYVIFEDTQQGKLIFTSFGATLYQMFILFTTSNNPDVWIPAYKASRWYCLFFVLYVLLGVYFVTNLILAVVYDSFKSQLAKQISEMDRLRKSILAKAFSLMDTNNVGFINKEQCLILLEELNRYRTLPKISRDDYELIFDELDDSRDFKINMNEFDDLCNAIALKFQKEDIPSWFEGYPSIYHSVFSKKLKAFVRSPTFGYAVSFILILNLIAVIIETTLDIENNVGQKAWQELEFVFGWIYVVEMALKIYAFGFLNYWRDGQNQFDFLVTWIIVIGETITFVAPSGLTFLSNGEWIRYLLIARMLRLIRLLMHVRQYRAFLATFLTLIPSLMPYLGTIFCVLCLYCTLGVQVFGGIVNAGNPTLSKTDLNDDDYLLFNFNDYPNGMVTLFNLLVMGNWQDWMQSYKELTGSIWSLVYFISFYLITVLLLLNLVVAFVLEAFFAELDIESSENGEEQDQDGDSRKDRRRFVGTKSRSRKSCFFSR 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3116597 3137575 - ClG42_07g0027800.10 Clacu07g0278 252876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0278 727 CDD EFh 336 400 IPR002048 GO:0005509(InterPro)
Clacu07g0278 727 Gene3D - 210 318 - -
Clacu07g0278 727 FunFam Two pore calcium channel protein 1 564 721 - -
Clacu07g0278 727 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 721 IPR044581 GO:0000325(PANTHER)|GO:0005245(PANTHER)|GO:0005245(InterPro)|GO:0005774(PANTHER)|GO:0006816(PANTHER)
Clacu07g0278 727 FunFam Two pore calcium channel protein 1 431 563 - -
Clacu07g0278 727 Gene3D - 430 563 IPR027359 -
Clacu07g0278 727 MobiDBLite consensus disorder prediction 1 24 - -
Clacu07g0278 727 SUPERFAMILY Voltage-gated potassium channels 438 684 - -
Clacu07g0278 727 FunFam Two pore calcium channel protein 1 210 321 - -
Clacu07g0278 727 Gene3D - 564 722 - -
Clacu07g0278 727 SUPERFAMILY EF-hand 327 418 IPR011992 -
Clacu07g0278 727 MobiDBLite consensus disorder prediction 693 727 - -
Clacu07g0278 727 Pfam Ion transport protein 439 684 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g0278 727 Pfam Ion transport protein 131 320 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g0278 727 Gene3D - 319 402 - -
Clacu07g0278 727 ProSiteProfiles EF-hand calcium-binding domain profile. 331 366 IPR002048 GO:0005509(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0278 K16900 - csv:101206980 1289.63