Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0290 ATGCAGCTGAATGTGATAATGTTGGTGAATTTAGTAGTGATGGCCATGGGGAAGTTTCTTGTGGTTGAATCAGCTCGGCTTCCAAACCGTACGTCAGCTTCCCATTGGCTCCCCGCCACCGCCACCTGGTACGGCAGCCCTGAAGGCGACGGCAGCGACGGTGGGGCATGTGGCTACGGTAGTTTGGTGGACGTGAAGCCGTTCAAAGCGAGAGTAGGGGCCGTGAGTCCAATCCTATTCAAGGACGGGGAAGGGTGCGGCGCGTGCTACAAGGTCCGGTGCTTGGACCGAGCCATATGTGCCAAACGGGCTGTTACCATAATAGTGACCGACGAGTGTCCGGGTGGATACTGTGCCAGTGGCCGCACCCACTTCGACTTGAGTGGCGCCGCCTTCGGACGCATGGCAGTGGCAGGTGCGGGCAGCCGTCTTCGGGACCGAGGCGAATTGACCGTCATGTACAGACGGACACCGTGTAAATATCGAGGAAAGAATATAGCGTTTCATGTGAATGAAGGTTCTACGGATCATTGGCTTTCACTTTTGGTGGAGTTCGAGGATGGAGATGGTGATATTGGTTCTATGCAAATCAAACAAGCAAATTCAAATGAATGGATGGAAATGGCACATGTGTGGGGTGCAACATGGTGCATAAATGGAGGGCCTTTAGAGGGTCCATTTTCAGTGAAGTTAACAACATTATCCACAGCCAAAACTCTGTCAGCAAGAGATGTTATCCCAAGGAATTGGTCTCCAAAGGCAACTTACACTTCTCGTTTGAACTTCTCCTAA 792 51.89 MQLNVIMLVNLVVMAMGKFLVVESARLPNRTSASHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPILFKDGEGCGACYKVRCLDRAICAKRAVTIIVTDECPGGYCASGRTHFDLSGAAFGRMAVAGAGSRLRDRGELTVMYRRTPCKYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQANSNEWMEMAHVWGATWCINGGPLEGPFSVKLTTLSTAKTLSARDVIPRNWSPKATYTSRLNFS 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3228956 3232363 + ClG42_07g0029000.10 Clacu07g0290 252888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0290 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 258 IPR007117 -
Clacu07g0290 263 SUPERFAMILY Barwin-like endoglucanases 27 163 IPR036908 -
Clacu07g0290 263 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576(InterPro)
Clacu07g0290 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576(InterPro)
Clacu07g0290 263 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576(InterPro)
Clacu07g0290 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576(InterPro)
Clacu07g0290 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576(InterPro)
Clacu07g0290 263 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Clacu07g0290 263 CDD DPBB_EXPB_N 36 159 - -
Clacu07g0290 263 Gene3D - 161 263 IPR036749 -
Clacu07g0290 263 SMART dpbb_1 72 154 IPR007112 -
Clacu07g0290 263 Pfam Expansin C-terminal domain 166 247 IPR007117 -
Clacu07g0290 263 SUPERFAMILY PHL pollen allergen 164 258 IPR036749 -
Clacu07g0290 263 FunFam Beta-expansin 3 161 263 - -
Clacu07g0290 263 Gene3D - 21 160 IPR036908 -
Clacu07g0290 263 FunFam Expansin B3 22 160 - -
Clacu07g0290 263 PRINTS Major pollen allergen Lol pI signature 74 85 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu07g0290 263 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu07g0290 263 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu07g0290 263 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu07g0290 263 PRINTS Major pollen allergen Lol pI signature 234 251 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu07g0290 263 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu07g0290 263 Pfam Lytic transglycolase 74 141 IPR009009 -
Clacu07g0290 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 164 IPR007112 -
Clacu07g0290 263 PANTHER EXPANSIN-B3 13 262 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0290 Clacu-Chr7:3228956 Clacu10g0664 Clacu-Chr10:9307417 2.20E-27 dispersed
Clacu05g0027 Clacu-Chr5:555931 Clacu07g0290 Clacu-Chr7:3228956 5.10E-64 transposed
Clacu09g1282 Clacu-Chr9:13599746 Clacu07g0290 Clacu-Chr7:3228956 4.10E-23 transposed
Clacu02g1790 Clacu-Chr2:31439954 Clacu07g0290 Clacu-Chr7:3228956 7.70E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0290 K20628 - csv:101205324 479.559