Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0304 ATGGAGGGTTTTGTGAGGTTTTTGGGTTTGGCAAAGCCATATTTTGGAGTTCTTTTTATGCAATTTGGTTCGGCTGGAATGGCAATTCTTGCAAAGTTTGCTTTGAACAAAGGGATGAGCCAATATGTTTTTGTGTTTTATCGTATGATTATCGCTACTATTATTATTGCTCCTTTTGCCATCATATTTGAAAGGAAAGTGAAGACAAAGATGACCATTCCGTTGGTCTTCAAGATTGTGATGTTGGGTTTATTAGAGCCAGTGATTGATCTCAACTTATACTTTACTGGGATGAAGTATACAACAGCAACCTTTGCAGTTGCCATGTGCAATGTTCTACCAGCTTTTGCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAGAGTGAATATTTTGAAAAGGGGAAGCCAAGCAAAAATCCTAGGAACCATAGTAACAGTAGGAGGAGCCATGATTATGACTTTCATTAGAGGACCCATGTTGAATCTGCCATGGACAAAAGCCAACCATCCCTCTGCTTCTTCTTCAACTGCTTCAATAAATCACCAAGACCAAATCAAGGGCTCCCTCATGATTGCAATTGGCTGCATTTGCCAGTCAGCTTTCATCATTCTTCAGGCGATTACATTGAAATTGTACCCAGCTGAGCTGTCTCTTACAGCATTGATATGCTTGGTGGCCACCATTGGAGGCTGTGTGGTTGCTTCGGTCATGGAAAGAGGGAACCCTTCTGCTTGGGCTTTGCATTTTGATAGCCAGCTTCTATCTGTGGTTTACGCTGGAGTAATATGTTCAGGGGTAACATATTATATTCAAGGAATGGTGATGCAAATAAAAGGGCCTGTTTTTGTCACTGCATTCAATCCTCTGTCCATGATTTTTGTTGCAATCATGAGCTCCTTCATCTTGTCTGAGATTATGTTGCTGGGCAGGATTATTGGAGCAGTGACCATAATCACTGGGTTGTACCTAGTTCTGTGGGGCAAAAGAAAAGATCAACTTTCAGTTAAATCAGACTGTGATAACATAGCACATGGTAAGCAACAAATGACTGAAATAGGTGAGGCGTCGAAGACGGATCAATCGAGTCAAGAATTCGCCTCAGCTTGA 1110 41.8 MEGFVRFLGLAKPYFGVLFMQFGSAGMAILAKFALNKGMSQYVFVFYRMIIATIIIAPFAIIFERKVKTKMTIPLVFKIVMLGLLEPVIDLNLYFTGMKYTTATFAVAMCNVLPAFAFLMAWACRLERVNILKRGSQAKILGTIVTVGGAMIMTFIRGPMLNLPWTKANHPSASSSTASINHQDQIKGSLMIAIGCICQSAFIILQAITLKLYPAELSLTALICLVATIGGCVVASVMERGNPSAWALHFDSQLLSVVYAGVICSGVTYYIQGMVMQIKGPVFVTAFNPLSMIFVAIMSSFILSEIMLLGRIIGAVTIITGLYLVLWGKRKDQLSVKSDCDNIAHGKQQMTEIGEASKTDQSSQEFASA 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3379851 3383708 - ClG42_07g0030400.10 Clacu07g0304 252902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0304 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Clacu07g0304 369 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020(InterPro)
Clacu07g0304 369 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020(InterPro)
Clacu07g0304 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 331 - -
Clacu07g0304 369 PANTHER WAT1-RELATED PROTEIN 18 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0304 Clacu-Chr7:3379851 Clacu09g2041 Clacu-Chr9:35246459 1.30E-107 dispersed
Clacu07g0304 Clacu-Chr7:3379851 Clacu07g0305 Clacu-Chr7:3417540 1.40E-149 tandem
Clacu04g0890 Clacu-Chr4:23251766 Clacu07g0304 Clacu-Chr7:3379851 6.20E-108 wgd
Clacu07g0304 Clacu-Chr7:3379851 Clacu09g2039 Clacu-Chr9:35188666 1.20E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0304 - - - 0.0