Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0305 ATGGAGAGTTTTGTAAGGTTTTTGGGTTCGGCAAAACCGTATTTTGGAGTGATTTTTATACAGTTTGGTTATGCTGGAATGACGATTCTTACAAAATCAGCTTTAAACAAAGGGATGAGCCAATATATTTTTGTGGTTTATCGTCAAGTTGCTGCTACTCTTGTCATGGCTCCTTTTGCCATTATCTTTGATAGGAAGGCGAGGACAAAGATGTCCTTTTCATTGTTCTTCAAGATTTTGATTCTGGGTTTCTTAGAGCCAGTAATTGATCAAAACTTATTCTATACTGGTATGAAGTACACAACAGCAACTTTTGCATCGGCCATGTGCAATGTTCTTCCAGCTTTTGTTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAATATTTTGAAAAGGGGAAGCCAAGCAAAAATCCTAGGAACCATAGTAACAGTAGGAGGAGCCATGATTATGACCTTCATAAAAGGGCCAATGTTGAATTTACCATGGACAAAATTACCCAATCACCCCTCTGCTTCTTCTTCATCAGCTTCTTCTCCAAATCACCAAAGCACAATCATGGGCTTCCTCATGATTGCAACTGGCTGCATTTGCTGGTCAGCTTTCATCATTCTTCAGGCGATTACGTTGAAATCGTACCCGGCCGAGCTATCGCTTACAGCATTGATATGCTTGGTTGGCACCATTGGAGGCTCTGGGTTTGCTTTGATCATGGAGAGGGGGAACCCTTCTGCTTGGGCTTTGCACTTTGACAGCCAGCTTCTAGCTGTGGTTTATTCTGGTGTAATATGTTCAGGGGTAACTTATTATATTCAAGGAGTGGTGATGCAAACAAAAGGGCCTGTTTTTTTCTCTGCATTCAATCCTCTGTCCATGATTCTTGTTGCAATCATGAGCTCCTTCATCTTGTCTGAGATTATGTTGTTGGGAAGGATTGTTGGAGCAGTGGTCATAATCATTGGCTTGTACCTTGTTTTGTGGGGGAAAACCAAAGATCAGCCTTCAATACTTAAATCAGAATGTGATAAGATAACACCTTGTGAGCAACAAATGATCACTGCAAATGATGAGGCTTCCAAGATGACGATGGCGGTTCGATCGAGTCAAGAATTCGTCGCGCTTGATGTTGAAAAAGAGGAGAGAAATTGA 1155 41.65 MESFVRFLGSAKPYFGVIFIQFGYAGMTILTKSALNKGMSQYIFVVYRQVAATLVMAPFAIIFDRKARTKMSFSLFFKILILGFLEPVIDQNLFYTGMKYTTATFASAMCNVLPAFVFLMAWACRLEKVNILKRGSQAKILGTIVTVGGAMIMTFIKGPMLNLPWTKLPNHPSASSSSASSPNHQSTIMGFLMIATGCICWSAFIILQAITLKSYPAELSLTALICLVGTIGGSGFALIMERGNPSAWALHFDSQLLAVVYSGVICSGVTYYIQGVVMQTKGPVFFSAFNPLSMILVAIMSSFILSEIMLLGRIVGAVVIIIGLYLVLWGKTKDQPSILKSECDKITPCEQQMITANDEASKMTMAVRSSQEFVALDVEKEERN 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3417540 3423477 - ClG42_07g0030500.10 Clacu07g0305 252903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0305 384 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020(InterPro)
Clacu07g0305 384 Pfam EamA-like transporter family 189 328 IPR000620 GO:0016020(InterPro)
Clacu07g0305 384 PANTHER WAT1-RELATED PROTEIN 18 347 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu07g0305 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Clacu07g0305 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0305 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0890 Clacu-Chr4:23251766 Clacu07g0305 Clacu-Chr7:3417540 2.30E-110 dispersed
Clacu07g0305 Clacu-Chr7:3417540 Clacu09g2041 Clacu-Chr9:35246459 1.10E-109 dispersed
Clacu07g0304 Clacu-Chr7:3379851 Clacu07g0305 Clacu-Chr7:3417540 1.40E-149 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g256 . . . Bda15g00214 . . . . Cmo04g00228 Cmo04g01271 Cma04g01198 Cma04g00225 Car04g01101 . . Cpe13g00840 Cpe01g00192 . . . . . . . Cla07g00296 Cam07g0313 Cec07g0357 Cco07g0318 Clacu07g0305 Cmu07g0362 Cre07g0673 . . Cone11ag1117 Cone18ag0463 Lsi02g01665 . Chy10g00555 Cme10g00878 Blo13g00756 Blo04g00287 . . Bpe04g01845 . . Bma08g00989 . Cmo04g02748 Cmo15g00424 Cma04g02624 . . . Cpe01g01103 . . . . . . . . . . . . . . . Lsi04g00874 Csa05g01817 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu07g1107 . 1 755 Nodulin-like Gene Family AT4G19180 61.2 2.9e-250 861.7
Clacu11g1782 . 19 279 Nodulin-like Gene Family AT3G45870 70.5 2.3e-99 359.0
Clacu09g1923 . 27 386 Nodulin-like Gene Family AT3G28050 58.8 1.3e-113 406.8
Clacu10g0256 . 2 335 Nodulin-like Gene Family AT5G47470 60.6 1.9e-104 376.3
Clacu01g0420 . 7 338 Nodulin-like Gene Family AT5G47470 57.7 4.1e-99 358.6
Clacu09g1923 . 25 348 Nodulin-like Gene Family AT5G40230 54.0 8.0e-92 334.3
Clacu09g1923 . 18 348 Nodulin-like Gene Family AT5G40240 52.3 2.5e-90 329.3
Clacu10g1435 . 6 364 Nodulin-like Gene Family AT5G40240 50.4 2.5e-90 329.3
Clacu10g1434 . 12 335 Nodulin-like Gene Family AT5G40240 50.8 6.1e-84 308.1
Clacu05g2031 . 16 274 Nodulin-like Gene Family AT3G53210 60.6 5.1e-85 311.2
Clacu08g1626 . 16 282 Nodulin-like Gene Family AT3G53210 57.3 2.0e-84 309.3
Clacu04g0890 . 99 360 Nodulin-like Gene Family AT2G37450 59.8 1.8e-82 302.8
Clacu07g0304 . 98 332 Nodulin-like Gene Family AT2G37450 56.6 5.7e-68 254.6
Clacu07g0305 . 98 334 Nodulin-like Gene Family AT2G37450 55.7 1.3e-67 253.4
Clacu08g0702 . 74 314 Nodulin-like Gene Family AT2G37450 50.4 1.2e-65 246.9
Clacu11g1749 . 104 336 Nodulin-like Gene Family AT2G37450 54.5 2.9e-64 242.3
Clacu09g2039 . 100 333 Nodulin-like Gene Family AT2G37450 51.5 8.8e-61 230.7
Clacu04g0890 . 12 338 Nodulin-like Gene Family AT2G37460 67.6 8.9e-123 437.2
Clacu07g0305 . 11 334 Nodulin-like Gene Family AT2G37460 57.4 5.6e-101 364.8
Clacu07g0304 . 11 332 Nodulin-like Gene Family AT2G37460 57.1 1.0e-97 354.0
Clacu11g1749 . 16 343 Nodulin-like Gene Family AT2G37460 55.2 1.0e-97 354.0
Clacu04g0634 . 13 362 Nodulin-like Gene Family AT2G37460 51.0 3.3e-93 339.0
Clacu09g2039 . 10 333 Nodulin-like Gene Family AT2G37460 55.7 7.4e-93 337.8
Clacu09g2041 . 8 331 Nodulin-like Gene Family AT2G37460 53.1 9.7e-93 337.4
Clacu08g0702 . 2 307 Nodulin-like Gene Family AT2G37460 51.5 7.6e-90 327.8
Clacu10g1627 . 12 342 Nodulin-like Gene Family AT2G37460 52.7 3.2e-88 322.4
Clacu08g1626 . 4 395 Nodulin-like Gene Family AT1G75500 72.5 3.8e-161 564.7
Clacu05g2031 . 1 388 Nodulin-like Gene Family AT1G75500 73.0 5.9e-154 540.8
Clacu06g1558 . 21 347 Nodulin-like Gene Family AT1G75500 62.2 1.9e-115 412.9
Clacu05g2711 . 1 366 Nodulin-like Gene Family AT1G60050 50.8 1.0e-94 344.0
Clacu07g0305 . 8 361 Nodulin-like Gene Family AT2G39510 59.6 6.5e-118 421.0
Clacu07g0304 . 12 341 Nodulin-like Gene Family AT2G39510 61.6 6.3e-113 404.4
Clacu04g0890 . 13 345 Nodulin-like Gene Family AT2G39510 60.5 1.6e-111 399.8
Clacu09g2041 . 8 343 Nodulin-like Gene Family AT2G39510 56.2 1.6e-108 389.8
Clacu09g2039 . 13 334 Nodulin-like Gene Family AT2G39510 59.2 8.3e-105 377.5
Clacu11g1749 . 18 335 Nodulin-like Gene Family AT2G39510 57.3 2.6e-98 355.9
Clacu04g0634 . 16 339 Nodulin-like Gene Family AT2G39510 52.0 5.6e-93 338.2
Clacu10g1627 . 16 340 Nodulin-like Gene Family AT2G39510 52.1 6.8e-91 331.3
Clacu08g0702 . 2 234 Nodulin-like Gene Family AT4G08290 65.0 1.8e-80 296.2
Clacu11g1749 . 14 263 Nodulin-like Gene Family AT4G08290 53.3 1.3e-73 273.5
Clacu11g1749 . 12 355 Nodulin-like Gene Family AT4G08300 66.6 2.1e-124 442.6
Clacu08g0702 . 2 333 Nodulin-like Gene Family AT4G08300 50.1 3.5e-87 318.9
Clacu04g0890 . 13 332 Nodulin-like Gene Family AT4G08300 50.2 5.6e-85 311.6
Clacu02g0077 . 9 260 Nodulin-like Gene Family AT5G64700 60.7 1.4e-77 286.6
Clacu01g1633 . 1 236 Nodulin-like Gene Family AT5G64700 53.3 2.0e-60 229.6
Clacu02g0076 . 1 187 Nodulin-like Gene Family AT5G64700 56.3 1.1e-47 187.2
Clacu11g1455 . 1 368 Nodulin-like Gene Family AT4G30420 53.8 3.2e-104 375.6
Clacu11g1504 . 6 406 Nodulin-like Gene Family AT5G07050 63.7 1.0e-140 496.9
Clacu10g1627 . 10 342 Nodulin-like Gene Family AT5G07050 68.0 9.8e-128 453.8
Clacu04g0634 . 10 339 Nodulin-like Gene Family AT5G07050 64.3 2.1e-122 436.0
Clacu11g1749 . 18 336 Nodulin-like Gene Family AT5G07050 52.4 1.9e-94 343.2
Clacu09g2041 . 8 331 Nodulin-like Gene Family AT5G07050 50.8 7.1e-86 314.7
Clacu04g0634 . 13 357 Nodulin-like Gene Family AT3G56620 58.8 8.9e-107 384.0
Clacu11g1504 . 14 338 Nodulin-like Gene Family AT3G56620 56.7 1.8e-99 359.8
Clacu05g2711 . 1 372 Nodulin-like Gene Family AT1G70260 55.4 7.5e-106 380.9
Clacu01g1095 . 73 401 Nodulin-like Gene Family AT1G09380 61.8 3.5e-111 398.7
Clacu02g1517 . 1 332 Nodulin-like Gene Family AT1G09380 58.4 1.0e-110 397.1
Clacu10g0256 . 92 325 Nodulin-like Gene Family AT4G16620 50.2 2.2e-56 216.1
Clacu04g0634 . 13 352 Nodulin-like Gene Family AT2G40900 60.6 3.4e-109 392.1
Clacu10g1627 . 12 363 Nodulin-like Gene Family AT2G40900 53.4 1.0e-105 380.6
Clacu11g1504 . 14 333 Nodulin-like Gene Family AT2G40900 57.2 1.3e-100 363.6
Clacu06g1558 . 15 365 Nodulin-like Gene Family AT3G18200 68.5 3.2e-128 455.3
Clacu08g1626 . 16 360 Nodulin-like Gene Family AT3G18200 57.7 8.2e-108 387.5
Clacu05g2031 . 16 354 Nodulin-like Gene Family AT3G18200 54.6 3.7e-100 362.1
Clacu11g1749 . 12 355 Nodulin-like Gene Family AT1G44800 64.6 1.9e-122 436.0
Clacu08g0702 . 2 326 Nodulin-like Gene Family AT1G44800 51.7 7.4e-90 327.8
Clacu04g0634 . 12 339 Nodulin-like Gene Family AT1G44800 50.3 1.2e-87 320.5
Clacu11g1782 . 103 373 Nodulin-like Gene Family AT5G45370 68.7 2.2e-102 369.0
Clacu11g1749 . 12 313 Nodulin-like Gene Family AT1G21890 65.7 6.3e-115 411.0
Clacu10g1627 . 15 318 Nodulin-like Gene Family AT1G21890 52.9 1.8e-85 313.2
Clacu08g0702 . 2 284 Nodulin-like Gene Family AT1G21890 51.0 1.6e-81 300.1
Clacu04g0890 . 11 311 Nodulin-like Gene Family AT1G21890 50.3 7.8e-81 297.7
Clacu07g1236 . 1 565 Nodulin-like Gene Family AT1G80530 59.4 2.0e-187 652.5
Clacu07g1125 . 4 417 Nodulin-like Gene Family AT4G19450 65.7 1.8e-145 512.7
Clacu06g0063 . 44 442 Nodulin-like Gene Family AT4G19450 57.7 3.5e-128 455.3
Clacu06g1755 . 7 538 Nodulin-like Gene Family AT1G74780 58.2 9.4e-179 623.6
Clacu06g1757 . 13 468 Nodulin-like Gene Family AT1G74780 57.6 6.0e-149 524.6
Clacu06g1756 . 6 441 Nodulin-like Gene Family AT1G74780 55.8 1.9e-134 476.5
Clacu02g1212 . 9 540 Nodulin-like Gene Family AT4G34950 69.8 2.4e-220 761.9
Clacu02g0446 . 1 469 Nodulin-like Gene Family AT4G34950 64.4 4.7e-184 641.3
Clacu11g0925 . 6 592 Nodulin-like Gene Family AT5G14120 68.9 8.5e-234 806.6
Clacu02g1212 . 1 386 Nodulin-like Gene Family AT2G16660 70.1 2.1e-151 532.3
Clacu02g0446 . 1 323 Nodulin-like Gene Family AT2G16660 65.6 3.9e-121 431.8
Clacu05g2320 . 12 565 Nodulin-like Gene Family AT2G39210 70.6 1.5e-228 789.3
Clacu08g0930 . 28 604 Nodulin-like Gene Family AT2G39210 63.1 1.2e-211 733.0
Clacu05g2322 . 3 559 Nodulin-like Gene Family AT2G39210 64.3 1.8e-202 702.6
Clacu05g2321 . 15 552 Nodulin-like Gene Family AT2G39210 63.0 2.9e-200 695.3
Clacu10g1973 . 1 579 Nodulin-like Gene Family AT2G39210 59.3 1.4e-194 676.4
Clacu03g0266 . 19 575 Nodulin-like Gene Family AT2G39210 59.6 5.6e-188 654.4
Clacu04g0993 . 18 579 Nodulin-like Gene Family AT2G39210 56.4 1.2e-182 636.7
Clacu10g1976 . 15 555 Nodulin-like Gene Family AT2G39210 57.8 6.7e-181 630.9
Clacu04g0263 . 12 532 Nodulin-like Gene Family AT2G39210 52.5 7.0e-154 541.2
Clacu03g0254 . 16 557 Nodulin-like Gene Family AT2G39210 51.0 5.9e-153 538.1
Clacu03g0257 . 49 279 Nodulin-like Gene Family AT2G39210 52.3 3.0e-64 243.4
Clacu03g0256 . 20 208 Nodulin-like Gene Family AT2G39210 52.4 1.5e-55 214.5
Clacu07g1125 . 7 565 Nodulin-like Gene Family AT3G01630 52.8 2.7e-147 519.2
Clacu06g0063 . 50 589 Nodulin-like Gene Family AT3G01630 50.4 3.7e-141 498.8
Clacu11g0925 . 6 429 Nodulin-like Gene Family AT3G01930 69.4 5.2e-167 584.3
Clacu06g1755 . 10 537 Nodulin-like Gene Family AT1G18940 54.5 1.2e-165 580.1
Clacu06g1757 . 7 468 Nodulin-like Gene Family AT1G18940 54.6 3.1e-142 502.3
Clacu06g1756 . 3 441 Nodulin-like Gene Family AT1G18940 53.8 6.8e-129 458.0
Clacu06g1755 . 6 539 Nodulin-like Gene Family AT2G34350 56.2 1.9e-160 562.8
Clacu06g1757 . 11 468 Nodulin-like Gene Family AT2G34350 54.1 3.3e-136 482.3
Clacu06g1756 . 8 441 Nodulin-like Gene Family AT2G34350 53.5 5.0e-124 441.8
Clacu03g0266 . 15 569 Nodulin-like Gene Family AT2G28120 70.3 4.0e-223 771.2
Clacu05g2320 . 9 568 Nodulin-like Gene Family AT2G28120 62.0 4.9e-197 684.5
Clacu08g0930 . 24 588 Nodulin-like Gene Family AT2G28120 59.1 1.3e-186 649.8
Clacu10g1973 . 19 563 Nodulin-like Gene Family AT2G28120 60.2 5.8e-182 634.4
Clacu03g0254 . 13 561 Nodulin-like Gene Family AT2G28120 57.2 2.3e-178 622.5
Clacu05g2322 . 9 563 Nodulin-like Gene Family AT2G28120 57.4 1.8e-175 612.8
Clacu10g1976 . 17 555 Nodulin-like Gene Family AT2G28120 58.1 5.8e-174 607.8
Clacu04g0993 . 16 573 Nodulin-like Gene Family AT2G28120 55.8 2.7e-171 599.0
Clacu05g2321 . 39 537 Nodulin-like Gene Family AT2G28120 60.4 5.1e-170 594.7
Clacu03g0263 . 8 581 Nodulin-like Gene Family AT2G28120 54.1 1.1e-167 587.0
Clacu03g0261 . 2 544 Nodulin-like Gene Family AT2G28120 51.0 6.2e-160 561.2
Clacu03g0262 . 3 576 Nodulin-like Gene Family AT2G28120 50.3 5.8e-158 554.7
Clacu04g0263 . 1 535 Nodulin-like Gene Family AT2G28120 52.2 1.8e-151 533.1
Clacu03g0265 . 3 545 Nodulin-like Gene Family AT2G28120 50.3 2.2e-144 509.6
Clacu03g0256 . 14 208 Nodulin-like Gene Family AT2G28120 56.4 1.8e-58 224.2
Clacu07g1125 . 4 570 Nodulin-like Gene Family AT1G31470 56.4 1.0e-165 580.5
Clacu06g0063 . 50 596 Nodulin-like Gene Family AT1G31470 56.3 6.7e-162 567.8
Clacu09g0964 . 27 216 Nodulin-like Gene Family AT1G76800 76.8 1.4e-71 266.2
Clacu08g0842 . 17 215 Nodulin-like Gene Family AT1G76800 69.8 5.0e-69 257.7
Clacu09g1502 . 10 202 Nodulin-like Gene Family AT1G76800 62.2 1.1e-58 223.4
Clacu09g1502 . 9 202 Nodulin-like Gene Family AT3G25190 68.5 1.1e-64 243.4
Clacu08g0842 . 23 215 Nodulin-like Gene Family AT3G25190 63.2 7.3e-61 230.7
Clacu09g0964 . 34 216 Nodulin-like Gene Family AT3G25190 63.7 5.8e-58 221.1
Clacu08g0842 . 20 215 Nodulin-like Gene Family AT1G21140 75.5 5.9e-73 270.8
Clacu09g0964 . 29 216 Nodulin-like Gene Family AT1G21140 73.9 4.6e-70 261.2
Clacu09g1502 . 7 202 Nodulin-like Gene Family AT1G21140 61.2 7.2e-63 237.3
Clacu08g0842 . 20 212 Nodulin-like Gene Family AT3G43630 77.2 2.9e-72 268.5
Clacu09g0964 . 29 213 Nodulin-like Gene Family AT3G43630 73.5 6.7e-69 257.3
Clacu09g1502 . 7 199 Nodulin-like Gene Family AT3G43630 61.1 2.2e-59 225.7
Clacu08g0842 . 20 215 Nodulin-like Gene Family AT3G43660 74.0 6.4e-72 267.3
Clacu09g0964 . 25 216 Nodulin-like Gene Family AT3G43660 70.8 3.5e-70 261.5
Clacu09g1502 . 7 202 Nodulin-like Gene Family AT3G43660 61.9 7.8e-62 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000706 1 4 2 1 1 3 1 3 3 3 3 3 6 3 3 5 3 2 3 3 3 4 2 6 6 3 2 8 6 1 97