Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0324 ATGGCCGCCCTTCCTCTTACTCTTCTCCTCATTCTCCTTTCGCTTCTTGCCGTCGACGCTAGGATCCCTGGAGTTTACTCCGGCGGCCAGTGGCAGAGTGCTCATGCTACTTTTTATGGCGGCAGTGACGCCTCCGGAACCATGGGAGGTGCTTGCGGTTACGGAAACTTATACAGCCAAGGCTACGGCGTAAACACGGCGGCGTTGAGTACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCCTGCTTCGAGCTTAAGTGCGCTAACGATCCACAGTGGTGCCATTCCGGCAGTCCGTCGATTTTCATCACGGCCACGAACTTTTGCCCTCCGAACTACGCTCTTCCAAGCGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCTGAGTACAGAGCCGGAATCGTTCCCGTCTCTTATCGCAGGGTGCCATGCCGCAAGCAAGGAGGAATAAGATTCACAATCAACGGTTTCCGCTACTTCAACTTGGTACTGATCACAAACGTGGCAGGCGCAGGGGACATCGTGAAGGCCAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCGTTTTGAAAACCTCCCGAGTGGTCATCTTCGGCCGAAATAGTGCCCCAATACCCGGTACTTGTGGCCCGACATCATCGGCTGTCACTCATTCCATGAATGCACTGAAGACATTCTGGGGCATTGGATGTGTCAGATCGTACACCACTCAACTGGGAGTCATATACTTCTTCACCTTCTTCGCATCCAGTGGAGGGCTTTGTCTTGGGTGGAGGAATGTGACGCACCTCAACGTCACGATCCTCGCTGTCAGAGAGTGGCTCGATGATGGGATCATGTATAGCCATTGGAGTAGGCTCGATGGAGGCAATGGTGGCCGACTCGGTAGTGGTGGTGGTGAGATCGATGTCAGTGGTGGACTCGGTCTGTGTGGTGGAATTGGGATGGGCGGTGGTATCAAGATCAGTGGTGGTGGTGAGATTGATGTTAATGGTGGTGGTGTGATCAAGATGGATGGTGGTAGTGGTGTCAAGATTAGTGGTGGTAATGGTCTCGGGATCGGCGATGGTATCGGTATCAATGGTGGTGGTGACATCAATATGACTGGTGGTGGTTTCGAGATGGGAGGTGGTGGTCTTAGAGTTAGGATGGGTGGTAGTGGTCTCGGTATGGGTGGCAACCTCGTGATGAGTAGTGGTATCGAGAATGTCTTACACAAATTCACATATTATAGGAATTTCTTTAAATTAAAAAAAAATTAA 1344 52.01 MAALPLTLLLILLSLLAVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLKTSRVVIFGRNSAPIPGTCGPTSSAVTHSMNALKTFWGIGCVRSYTTQLGVIYFFTFFASSGGLCLGWRNVTHLNVTILAVREWLDDGIMYSHWSRLDGGNGGRLGSGGGEIDVSGGLGLCGGIGMGGGIKISGGGEIDVNGGGVIKMDGGSGVKISGGNGLGIGDGIGINGGGDINMTGGGFEMGGGGLRVRMGGSGLGMGGNLVMSSGIENVLHKFTYYRNFFKLKKN 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3670316 3674339 - ClG42_07g0032400.10 Clacu07g0324 252922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0324 447 Gene3D - 163 225 IPR036749 -
Clacu07g0324 447 PANTHER EXPANSIN-A15 9 222 IPR002963 GO:0009664(InterPro)
Clacu07g0324 447 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Clacu07g0324 447 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Clacu07g0324 447 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Clacu07g0324 447 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Clacu07g0324 447 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Clacu07g0324 447 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Clacu07g0324 447 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Clacu07g0324 447 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Clacu07g0324 447 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Clacu07g0324 447 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Clacu07g0324 447 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Clacu07g0324 447 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Clacu07g0324 447 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Clacu07g0324 447 Gene3D - 20 159 IPR036908 -
Clacu07g0324 447 FunFam Expansin 20 159 - -
Clacu07g0324 447 Pfam Lytic transglycolase 66 153 IPR009009 -
Clacu07g0324 447 Pfam Expansin C-terminal domain 164 217 IPR007117 -
Clacu07g0324 447 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 262 IPR007117 -
Clacu07g0324 447 SMART dpbb_1 66 153 IPR007112 -
Clacu07g0324 447 CDD DPBB_EXPA_N 30 158 - -
Clacu07g0324 447 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Clacu07g0324 447 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0324 Clacu-Chr7:3670316 Clacu07g0524 Clacu-Chr7:6700707 1.10E-87 dispersed
Clacu11g1251 Clacu-Chr11:20774673 Clacu07g0324 Clacu-Chr7:3670316 1.40E-08 transposed
Clacu02g2063 Clacu-Chr2:33926913 Clacu07g0324 Clacu-Chr7:3670316 2.40E-111 wgd
Clacu03g0145 Clacu-Chr3:1596699 Clacu07g0324 Clacu-Chr7:3670316 3.90E-69 wgd
Clacu04g0861 Clacu-Chr4:22946884 Clacu07g0324 Clacu-Chr7:3670316 9.80E-113 wgd
Clacu07g0324 Clacu-Chr7:3670316 Clacu09g2002 Clacu-Chr9:34875415 3.70E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0324 - - - 0.0