Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0337 ATGACAGGCCTTAACTCTTCTAATTTCTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTACGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTACATCTCCCCATTCATATCCGAAGCCACGCTGCCCTTACGGTCGCTTATGAAGCGCTCGAGCGCATGCGAGATCCTACCTATGGTTGCGTTGCGCATATTTTCGCATTGCAGCAAGAGGTTGCGAGCTTGCAAGAGGAGATAGAAATTCTGGGGAGCCAAATAGCAAACTTCACTGCTACCGGTGGGAGCGTTGCGGGGGTTGAGAATCCATTTATAGATCAGCTTCAAGTTTCACAACAGCTGAAAGATTTTGGGATGATGAACAGAGATGATTATCAAAATGAGCTGCTTTCTGAGTTGCCCTACCAAAGTTTTGATAACATCCAAAATGATAATAATGGTCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGGGTTTTGCAGCTCAAATGATGTTGTTGAGAGATCAGCCTGTGATGTTTCATTTGAGGAGAGTTTTGTTGGTTATCCATGGGTAGTTGGATGA 663 42.84 MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTATGGSVAGVENPFIDQLQVSQQLKDFGMMNRDDYQNELLSELPYQSFDNIQNDNNGQMISPLFCLGEEDGVFGFCSSNDVVERSACDVSFEESFVGYPWVVG 220
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 3837492 3838430 + ClG42_07g0033700.10 Clacu07g0337 252935
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0337 220 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Clacu07g0337 220 Coils Coil 93 120 - -
Clacu07g0337 220 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 132 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Clacu07g0337 220 Pfam Lateral organ boundaries (LOB) domain 13 109 IPR004883 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0337 Clacu-Chr7:3837492 Clacu09g0797 Clacu-Chr9:7180340 2.50E-32 dispersed
Clacu07g0337 Clacu-Chr7:3837492 Clacu06g0035 Clacu-Chr6:567627 1.10E-35 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47996 PF03195 LOB 8.90E-33 No_clan Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0337 K13945 - csv:101204875 375.941